Browse Element(s) Details


Os.56365.1.S1_at

Description gb:AK109929.1
DB_XREF= gi:32995138
TID=Os.56365.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56365 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-151-H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-151-H09, full insert sequence.
FL= gb:AK109929.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1937011/11bZIP transcription factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19340OsAffx.25142.1.S1_at11/113+10845671..10861878expressed protein
LOC_Os03g19340OsAffx.11208.1.S1_at1/113+10845671..10861878expressed protein
LOC_Os03g19350Os.57424.1.S1_at11/113+10866549..10877809ATP-dependent protease La family protein, expressed
LOC_Os03g19350Os.35212.1.S1_x_at1/113+10866549..10877809ATP-dependent protease La family protein, expressed
LOC_Os03g19360OsAffx.32248.1.A1_at8/113+10880636..10882389hypothetical protein
LOC_Os03g19360OsAffx.32260.1.A1_at5/113+10880636..10882389hypothetical protein
LOC_Os03g19370Os.56365.1.S1_at11/113+10884435..10885840bZIP transcription factor family protein, expressed
LOC_Os03g19380Os.10732.1.S1_s_at11/113+10889395..10890371CP12, putative, expressed
LOC_Os03g19390Os.11668.1.S1_at11/113+10890530..10892444Seed maturation protein PM36, putative, expressed
LOC_Os03g19400OsAffx.3275.1.S1_at11/113+10892628..10895524expressed protein
LOC_Os03g19410Os.9620.1.S1_at11/113+10897165..10904734prolyl oligopeptidase family protein, expressed
LOC_Os03g19410Os.11159.1.S1_at1/113+10897165..10904734prolyl oligopeptidase family protein, expressed
LOC_Os03g19420Os.9311.1.S1_at11/113+10905302..10906769Nicotianamine synthase 2, putative, expressed
LOC_Os03g19436Os.1478.1.S1_at11/113+10908316..10913811Nicotianamine synthase 1, putative, expressed
LOC_Os03g19436OsAffx.25145.1.S1_at7/113+10908316..10913811Nicotianamine synthase 1, putative, expressed
LOC_Os03g19436Os.30136.1.S1_at4/113+10908316..10913811Nicotianamine synthase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56365.1.S1_at--187--8751Chr03:10885580..10885604 (25 bp)
TGTACTTCCAGCCAGACTCGGTCAT
LOC_Os03g19370
Os.56365.1.S1_at--684--5711Chr03:10885594..10885618 (25 bp)
GACTCGGTCATGGATCCGGTCAGTA
LOC_Os03g19370
Os.56365.1.S1_at--1047--551Chr03:10885607..10885631 (25 bp)
ATCCGGTCAGTATGCTGCAGGGCTA
LOC_Os03g19370
Os.56365.1.S1_at--158--5551Chr03:10885643..10885667 (25 bp)
GAAACTCTACATTGTGTACTTGACT
LOC_Os03g19370
Os.56365.1.S1_at--615--7011Chr03:10885658..10885682 (25 bp)
GTACTTGACTTATGATTGTTGCCAC
LOC_Os03g19370
Os.56365.1.S1_at--249--731Chr03:10885669..10885693 (25 bp)
ATGATTGTTGCCACATGCGTGTCTT
LOC_Os03g19370
Os.56365.1.S1_at--275--2111Chr03:10885681..10885705 (25 bp)
ACATGCGTGTCTTCGGTTTGTATGG
LOC_Os03g19370
Os.56365.1.S1_at--248--7731Chr03:10885704..10885728 (25 bp)
GGTGTGATCTAGCTACTGTACGTTA
LOC_Os03g19370
Os.56365.1.S1_at--928--6531Chr03:10885740..10885764 (25 bp)
GATTTTACGATCCATATTCCTGTTT
LOC_Os03g19370
Os.56365.1.S1_at--393--4331Chr03:10885751..10885775 (25 bp)
CCATATTCCTGTTTTGATTGTGTAG
LOC_Os03g19370
Os.56365.1.S1_at--492--2331Chr03:10885779..10885803 (25 bp)
AAAGTATAGCTTGTTGCGAGGTACA
LOC_Os03g19370
Target Sequence 
TGTACTTCCAGCCAGACTCGGTCATGGATCCGGTCAGTATGCTGCAGGGCTACGAAAACATATGAAACTCTACATTGTGT
ACTTGACTTATGATTGTTGCCACATGCGTGTCTTCGGTTTGTATGGTGTGATCTAGCTACTGTACGTTAATACTGTTGTT
GATTTTACGATCCATATTCCTGTTTTGATTGTGTAGTAAAAAGTATAGCTTGTTGCGAGGTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56365.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis