Browse Element(s) Details


OsAffx.32248.1.A1_at

Description gb:BA000029.2
DB_XREF= gi:47118326
GEN=orf183
TID=OsAffx.32248.1
CNT=1
FEA=DNA_13
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=orf183 (Oryza sativa (japonica cultivar-group)) mitochondrion
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g193608/11hypothetical protein
LOC_Os02g061201/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19340OsAffx.25142.1.S1_at11/113+10845671..10861878expressed protein
LOC_Os03g19340OsAffx.11208.1.S1_at1/113+10845671..10861878expressed protein
LOC_Os03g19350Os.57424.1.S1_at11/113+10866549..10877809ATP-dependent protease La family protein, expressed
LOC_Os03g19350Os.35212.1.S1_x_at1/113+10866549..10877809ATP-dependent protease La family protein, expressed
LOC_Os03g19360OsAffx.32248.1.A1_at8/113+10880636..10882389hypothetical protein
LOC_Os03g19360OsAffx.32260.1.A1_at5/113+10880636..10882389hypothetical protein
LOC_Os03g19370Os.56365.1.S1_at11/113+10884435..10885840bZIP transcription factor family protein, expressed
LOC_Os03g19380Os.10732.1.S1_s_at11/113+10889395..10890371CP12, putative, expressed
LOC_Os03g19390Os.11668.1.S1_at11/113+10890530..10892444Seed maturation protein PM36, putative, expressed
LOC_Os03g19400OsAffx.3275.1.S1_at11/113+10892628..10895524expressed protein
LOC_Os03g19410Os.9620.1.S1_at11/113+10897165..10904734prolyl oligopeptidase family protein, expressed
LOC_Os03g19410Os.11159.1.S1_at1/113+10897165..10904734prolyl oligopeptidase family protein, expressed
LOC_Os03g19420Os.9311.1.S1_at11/113+10905302..10906769Nicotianamine synthase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32248.1.A1_at--371--2011NONE
ACTACAGTTACCGTCATAGACAATG
NONE
OsAffx.32248.1.A1_at--559--292Chr12:20504029..20504053 (25 bp)
ATAGTTGCCCATAAGAAGATCCATT
NONE
OsAffx.32248.1.A1_at--440--6213Chr12:20503977..20504001 (25 bp)
GGGCTCGCCAAATCAGTTACTGGTC
NONE
OsAffx.32248.1.A1_at--976--6774Chr02:20850329..20850351 (23 bp)
GTTACTGGTCCTAAAGAATTTGTGC
NONE
OsAffx.32248.1.A1_at--332--5233Chr12:20503947..20503971 (25 bp)
GAATTTGTGCTTTCCGCATCTGATA
NONE
OsAffx.32248.1.A1_at--354--9732Chr12:20503920..20503944 (25 bp)
TAATTTGGGCTCTCATAGGTCACAG
NONE
OsAffx.32248.1.A1_at--165--10313Chr12:20503762..20503786 (25 bp)
TTTCTCTAAAAGCTCTACAGCGCGA
NONE
OsAffx.32248.1.A1_at--1043--3372Chr12:20503745..20503769 (25 bp)
CAGCGCGAATAAGCCCTATGTATGG
NONE
OsAffx.32248.1.A1_at--905--10112Chr12:20503729..20503753 (25 bp)
TATGTATGGGCTCTGCGCTACTGTA
NONE
OsAffx.32248.1.A1_at--88--1972Chr12:20503710..20503734 (25 bp)
ACTGTATCCAGATTTTTACTTGCGA
NONE
OsAffx.32248.1.A1_at--3--10632Chr12:20503691..20503715 (25 bp)
TTGCGAAAAAATCCTCTATTTCCTG
NONE
Target Sequence 
ACTACAGTTACCGTCATAGACAATGATTCATTTGTGAATGCTAAATAATAGTTGCCCATAAGAAGATCCATTATTGGGTG
AATGGAGAATGGATCCAAGGGGCTCGCCAAATCAGTTACTGGTCCTAAAGAATTTGTGCTTTCCGCATCTGATAAATAAT
TTGGGCTCTCATAGGTCACAGCATCAGCCAATAAATCCTGTGTCAACGGCTCAGGTTGGTTTACCGATGAGCCCGACGAG
GAGAGCCTTTCACTCCCCGCTGGGCCTGGGCTCCCTGCGTCATTCCCATTGGCTGGGGCAGGTCCATCTCCCTCTTTCTC
TAAAAGCTCTACAGCGCGAATAAGCCCTATGTATGGGCTCTGCGCTACTGTATCCAGATTTTTACTTGCGAAAAAATCCT
CTATTTCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32248.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis