Browse Element(s) Details


Os.10732.1.S1_s_at

Description gb:AK103722.1
DB_XREF= gi:32988931
TID=Os.10732.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10732 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033138B13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033138B13, full insert sequence.
FL= gb:AK103722.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1938011/11CP12, putative, expressed
LOC_Os01g197401/11chloroplast protein 12, putative, expressed
LOC_Os03g037201/11Glyceraldehyde-3-phosphate dehydrogenase B, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19350Os.57424.1.S1_at11/113+10866549..10877809ATP-dependent protease La family protein, expressed
LOC_Os03g19350Os.35212.1.S1_x_at1/113+10866549..10877809ATP-dependent protease La family protein, expressed
LOC_Os03g19360OsAffx.32248.1.A1_at8/113+10880636..10882389hypothetical protein
LOC_Os03g19360OsAffx.32260.1.A1_at5/113+10880636..10882389hypothetical protein
LOC_Os03g19370Os.56365.1.S1_at11/113+10884435..10885840bZIP transcription factor family protein, expressed
LOC_Os03g19380Os.10732.1.S1_s_at11/113+10889395..10890371CP12, putative, expressed
LOC_Os03g19390Os.11668.1.S1_at11/113+10890530..10892444Seed maturation protein PM36, putative, expressed
LOC_Os03g19400OsAffx.3275.1.S1_at11/113+10892628..10895524expressed protein
LOC_Os03g19410Os.9620.1.S1_at11/113+10897165..10904734prolyl oligopeptidase family protein, expressed
LOC_Os03g19410Os.11159.1.S1_at1/113+10897165..10904734prolyl oligopeptidase family protein, expressed
LOC_Os03g19420Os.9311.1.S1_at11/113+10905302..10906769Nicotianamine synthase 2, putative, expressed
LOC_Os03g19436Os.1478.1.S1_at11/113+10908316..10913811Nicotianamine synthase 1, putative, expressed
LOC_Os03g19436OsAffx.25145.1.S1_at7/113+10908316..10913811Nicotianamine synthase 1, putative, expressed
LOC_Os03g19436Os.30136.1.S1_at4/113+10908316..10913811Nicotianamine synthase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006096biological_processglycolysis
GO:0009416biological_processresponse to light stimulus
GO:0009744biological_processresponse to sucrose stimulus
GO:0018316biological_processpeptide cross-linking via L-cystine
GO:0019253biological_processreductive pentose-phosphate cycle
GO:0009507cellular_componentchloroplast
GO:0009570cellular_componentchloroplast stroma
GO:0008886molecular_functionglyceraldehyde-3-phosphate dehydrogenase (NADP+) activity
GO:0008943molecular_functionglyceraldehyde-3-phosphate dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10732.1.S1_s_at--186--1471Chr03:10889631..10889655 (25 bp)
AGAAGGTGTCGGAGAGCATCAAGCA
LOC_Os03g19380
Os.10732.1.S1_s_at--94--4611Chr03:10889769..10889793 (25 bp)
GCGACCCGCTCGAGGAGTACTGCAA
LOC_Os03g19380
Os.10732.1.S1_s_at--852--6953Chr03:10889785..10889809 (25 bp)
GTACTGCAAGGACAACCCGGAGACC
LOC_Os03g19380
Os.10732.1.S1_s_at--494--6111Chr03:10889813..10889837 (25 bp)
GAGTGCCGCACCTACGAAGACTGAG
LOC_Os03g19380
Os.10732.1.S1_s_at--989--9931Chr03:10889825..10889849 (25 bp)
TACGAAGACTGAGCCCACACGAGCG
LOC_Os03g19380
Os.10732.1.S1_s_at--153--3451Chr03:10889854..10889878 (25 bp)
CAGTTCATCCATGGCTTTCGCCATT
LOC_Os03g19380
Os.10732.1.S1_s_at--1129--10291Chr03:10889869..10889893 (25 bp)
TTTCGCCATTGCTGTTACTGTGTTA
LOC_Os03g19380
Os.10732.1.S1_s_at--410--7431Chr03:10889888..10889912 (25 bp)
GTGTTACACATTTCAGCTCTAAGCA
LOC_Os03g19380
Os.10732.1.S1_s_at--273--5171Chr03:10889910..10889934 (25 bp)
GCAAGCTAGAGCAGCATGGCATACT
LOC_Os03g19380
Os.10732.1.S1_s_at--660--7711Chr03:10889936..10889960 (25 bp)
GGGTGTACACTTTGCCTCTTGGGCG
LOC_Os03g19380
Os.10732.1.S1_s_at--775--4451Chr03:10889949..10889973 (25 bp)
GCCTCTTGGGCGTGTAAGTTTGATC
LOC_Os03g19380
Target Sequence 
AGAAGGTGTCGGAGAGCATCAAGCAGGCGGAGGAGACGTGCGCGGGCGACCCGGAGGGCGGCGAGTGCGCGGCGGCGTGG
GACGAGGTGGAGGAGCTCAGCGCCGCCGCCAGCCACGCGCGCGACCGCAAGAAGGACAGCGACCCGCTCGAGGAGTACTG
CAAGGACAACCCGGAGACCGACGAGTGCCGCACCTACGAAGACTGAGCCCACACGAGCGCCACCAGTTCATCCATGGCTT
TCGCCATTGCTGTTACTGTGTTACACATTTCAGCTCTAAGCAAGCTAGAGCAGCATGGCATACTGGGGTGTACACTTTGC
CTCTTGGGCGTGTAAGTTTGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10732.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis