Browse Element(s) Details


Os.1478.1.S1_at

Description gb:AB021746.2
DB_XREF= gi:4586377
GEN=osnas1
TID=Os.1478.1
CNT=40
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.1478 (NCBI UniGene Cluster)
DEF=Oryza sativa (indica cultivar-group) osnas1 mRNA for nicotianamine synthase 1, complete cds.
PROD=nicotianamine synthase 1
FL= gb:AB021746.2 gb:AK112069.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1943611/11Nicotianamine synthase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19370Os.56365.1.S1_at11/113+10884435..10885840bZIP transcription factor family protein, expressed
LOC_Os03g19380Os.10732.1.S1_s_at11/113+10889395..10890371CP12, putative, expressed
LOC_Os03g19390Os.11668.1.S1_at11/113+10890530..10892444Seed maturation protein PM36, putative, expressed
LOC_Os03g19400OsAffx.3275.1.S1_at11/113+10892628..10895524expressed protein
LOC_Os03g19410Os.9620.1.S1_at11/113+10897165..10904734prolyl oligopeptidase family protein, expressed
LOC_Os03g19410Os.11159.1.S1_at1/113+10897165..10904734prolyl oligopeptidase family protein, expressed
LOC_Os03g19420Os.9311.1.S1_at11/113+10905302..10906769Nicotianamine synthase 2, putative, expressed
LOC_Os03g19436Os.1478.1.S1_at11/113+10908316..10913811Nicotianamine synthase 1, putative, expressed
LOC_Os03g19436OsAffx.25145.1.S1_at7/113+10908316..10913811Nicotianamine synthase 1, putative, expressed
LOC_Os03g19436Os.30136.1.S1_at4/113+10908316..10913811Nicotianamine synthase 1, putative, expressed
LOC_Os03g19452Os.46810.1.S1_at11/113+10917951..10923025expressed protein
LOC_Os03g19452OsAffx.3276.1.S1_at10/113+10917951..10923025expressed protein
LOC_Os03g19452Os.46810.2.S1_x_at1/113+10917951..10923025expressed protein
LOC_Os03g19470OsAffx.12937.1.S1_at11/113+10928353..10930665expressed protein
LOC_Os03g19480Os.21566.1.S1_at10/113+10931168..10938668Polycomb protein EZ3, putative, expressed
LOC_Os03g19480Os.52782.1.S1_at1/113+10931168..10938668Polycomb protein EZ3, putative, expressed
LOC_Os03g19490Os.34204.1.S1_at11/113+10938592..10941213expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1478.1.S1_at--256--511Chr03:10908862..10908886 (25 bp)
ATCGTCGATCCCGAGGACGTCAGGC
LOC_Os03g19436
Os.1478.1.S1_at--497--6711Chr03:10908830..10908854 (25 bp)
GTTCGACGTTCTGGCGGTGTGCCAC
LOC_Os03g19436
Os.1478.1.S1_at--689--6071Chr03:10908631..10908655 (25 bp)
GAGTTTGCCGCCAACAAGGAGCTGT
LOC_Os03g19436
Os.1478.1.S1_at--363--971Chr03:10908615..10908639 (25 bp)
AGGAGCTGTCCGTCTAACAGCCGGA
LOC_Os03g19436
Os.1478.1.S1_at--1130--5571Chr03:10908585..10908609 (25 bp)
GAAAGGCGCACTATATTATGGCAAT
LOC_Os03g19436
Os.1478.1.S1_at--526--2051Chr03:10908545..10908569 (25 bp)
ACTTATGCTGCATTTGCGAAGCTAA
LOC_Os03g19436
Os.1478.1.S1_at--696--4431Chr03:10908506..10908530 (25 bp)
GCCATATGTTTGTGTTCGTACGTGT
LOC_Os03g19436
Os.1478.1.S1_at--983--3431Chr03:10908468..10908492 (25 bp)
CAGTTGTGTTGTTGTACGTCGTGAA
LOC_Os03g19436
Os.1478.1.S1_at--851--6751Chr03:10908415..10908439 (25 bp)
GTTCACAGCAATCAATGAGGACCCT
LOC_Os03g19436
Os.1478.1.S1_at--349--691Chr03:10908401..10908425 (25 bp)
ATGAGGACCCTGTAAGCCAGTGTAA
LOC_Os03g19436
Os.1478.1.S1_at--556--951Chr03:10908373..10908397 (25 bp)
AGGAACATGCCATCTGTGTATGACA
LOC_Os03g19436
Target Sequence 
ATCGTCGATCCCGAGGACGTCAGGCGTGGCGGGTTCGACGTTCTGGCGGTGTGCCACCCGGAGGACGAGGTGATCAACTC
CGTCATCGTCGCCCGCAAGGTCGGNGCCGCCGCCGCCGCCGCCGCGGCGCGCAGAGACGAGCTCGCGGACTCGCGCGGCG
TGGTTCTGCCGGTGGTCGGGCCGCCGTCCACGTGCTGCAAGGTGGAGGCGAGCGCGGTTGAGAAGGCAGAAGAGTTTGCC
GCCAACAAGGAGCTGTCCGTCTAACAGCCGGACGATCGAAAGGCGCACTATATTATGGCAATAAATCATTTGATTATACT
TATGCTGCATTTGCGAAGCTAAGGTATACTATGCAAGCCATATGTTTGTGTTCGTACGTGTTGTTTGGGACGTACAGTTG
TGTTGTTGTACGTCGTGAAGTACTGAAGTGTTCACAGTAGATCACAAGTTCACAGCAATCAATGAGGACCCTGTAAGCCA
GTGTAAACGAGGAACATGCCATCTGTGTATGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1478.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis