Browse Element(s) Details


Os.21566.1.S1_at

Description gb:AF407010.1
DB_XREF= gi:22535906
GEN=SET1
TID=Os.21566.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21566 (NCBI UniGene Cluster)
DEF=Oryza sativa SET domain-containing protein (SET1) mRNA, complete cds.
PROD=SET domain-containing protein
FL= gb:AF407010.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1948010/11Polycomb protein EZ3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19420Os.9311.1.S1_at11/113+10905302..10906769Nicotianamine synthase 2, putative, expressed
LOC_Os03g19436Os.1478.1.S1_at11/113+10908316..10913811Nicotianamine synthase 1, putative, expressed
LOC_Os03g19436OsAffx.25145.1.S1_at7/113+10908316..10913811Nicotianamine synthase 1, putative, expressed
LOC_Os03g19436Os.30136.1.S1_at4/113+10908316..10913811Nicotianamine synthase 1, putative, expressed
LOC_Os03g19452Os.46810.1.S1_at11/113+10917951..10923025expressed protein
LOC_Os03g19452OsAffx.3276.1.S1_at10/113+10917951..10923025expressed protein
LOC_Os03g19452Os.46810.2.S1_x_at1/113+10917951..10923025expressed protein
LOC_Os03g19470OsAffx.12937.1.S1_at11/113+10928353..10930665expressed protein
LOC_Os03g19480Os.21566.1.S1_at10/113+10931168..10938668Polycomb protein EZ3, putative, expressed
LOC_Os03g19480Os.52782.1.S1_at1/113+10931168..10938668Polycomb protein EZ3, putative, expressed
LOC_Os03g19490Os.34204.1.S1_at11/113+10938592..10941213expressed protein
LOC_Os03g19500Os.14794.1.S1_at11/113+10941734..10944621ubiquitinating enzyme, putative, expressed
LOC_Os03g19510Os.8476.1.S1_at11/113+10945631..10948614ATP-dependent Clp protease proteolytic subunit 1, putative, expressed
LOC_Os03g19520Os.5359.1.S1_at11/113+10949596..10958074cyclin, putative, expressed
LOC_Os03g19530Os.54397.1.S1_at11/113+10963043..10967232DEAD/DEAH box helicase family protein, expressed
LOC_Os03g19530Os.26950.1.A1_s_at11/113+10963043..10967232DEAD/DEAH box helicase family protein, expressed
LOC_Os03g19530Os.28943.1.S1_x_at1/113+10963043..10967232DEAD/DEAH box helicase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009960biological_processendosperm development
GO:0009965biological_processleaf morphogenesis
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21566.1.S1_at--622--6391Chr03:10931850..10931874 (25 bp)
GATCGAGCAAATTCATCGTTCCTAT
LOC_Os03g19480
Os.21566.1.S1_at--314--1191Chr03:10931719..10931743 (25 bp)
AGTATGTACTGGATGCTTATCGCAA
LOC_Os03g19480
Os.21566.1.S1_at--628--6851Chr03:10931679..10931703 (25 bp)
GTTTGCAAATCACTCGTCGAATCCT
LOC_Os03g19480
Os.21566.1.S1_at--103--7211Chr03:10931664..10931688 (25 bp)
GTCGAATCCTAACTGCTATGCGAAG
LOC_Os03g19480
Os.21566.1.S1_at--66--10131Chr03:10931563..10931587 (25 bp)
TATGTTGGTGGCTGGCGATCATCGA
LOC_Os03g19480
Os.21566.1.S1_at--813--6431Chr03:10931547..10931571 (25 bp)
GATCATCGAGTTGGTATCTATGCAA
LOC_Os03g19480
Os.21566.1.S1_at--549--9011Chr03:10931527..10931551 (25 bp)
TGCAAAGGACCGCATTGAGGCTAGC
LOC_Os03g19480
Os.21566.1.S1_at--1098--6171Chr03:10931502..10931526 (25 bp)
GAGGAACTCTTTTATGATTACCGCT
LOC_Os03g19480
Os.21566.1.S1_at--622--8811Chr03:10931488..10931512 (25 bp)
TGATTACCGCTATGGACCTGACCAA
LOC_Os03g19480
Os.21566.1.S1_at--381--3171Chr03:10931313..10931337 (25 bp)
CAATCCTAGTCCATTATACGGCCAA
LOC_Os03g19480
Os.21566.1.S1_at--900--9071Chr03:10931167..10931189 (23 bp)
TGCTATGTATAGTTTTGCCTGTAAA
NONE
Target Sequence 
GATCGAGCAAATTCATCGTTCCTATTTGATTTAAATGAGCAGTATGTACTGGATGCTTATCGCAAGGGGGATAAACTGAA
GTTTGCAAATCACTCGTCGAATCCTAACTGCTATGCGAAGGTTATGTTGGTGGCTGGCGATCATCGAGTTGGTATCTATG
CAAAGGACCGCATTGAGGCTAGCGAGGAACTCTTTTATGATTACCGCTATGGACCTGACCAAGCCCCAGCTTGGGCTAGG
AGACCGGAAGGGTCAAAAAAGGATGAAGCATCTGTCTCTCACCACCGAGCGCACAAAGTTGCTAGATAGTCCAACAGCAG
CTCCAGATGATAATATCAACTGTAAATTATACCGTCATTGAAACACATAGTTCAATCCTAGTCCATTATACGGCCAATCG
TTGGCATAATAAGCATATTCTATATTCCTTAGTTCCTTGGTAAATAAACTGAGATATCGAGTATGCGAATAAAAGAAAAA
TAAGGCACTGTAAGTTTATTTGTANNAAGTTTGGAATTTATGCTATGTATAGTTTTGCCTGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21566.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis