Browse Element(s) Details


Os.14794.1.S1_at

Description gb:AK100355.1
DB_XREF= gi:32985564
TID=Os.14794.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14794 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023083I20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023083I20, full insert sequence.
FL= gb:AK100355.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1950011/11ubiquitinating enzyme, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19452Os.46810.1.S1_at11/113+10917951..10923025expressed protein
LOC_Os03g19452OsAffx.3276.1.S1_at10/113+10917951..10923025expressed protein
LOC_Os03g19452Os.46810.2.S1_x_at1/113+10917951..10923025expressed protein
LOC_Os03g19470OsAffx.12937.1.S1_at11/113+10928353..10930665expressed protein
LOC_Os03g19480Os.21566.1.S1_at10/113+10931168..10938668Polycomb protein EZ3, putative, expressed
LOC_Os03g19480Os.52782.1.S1_at1/113+10931168..10938668Polycomb protein EZ3, putative, expressed
LOC_Os03g19490Os.34204.1.S1_at11/113+10938592..10941213expressed protein
LOC_Os03g19500Os.14794.1.S1_at11/113+10941734..10944621ubiquitinating enzyme, putative, expressed
LOC_Os03g19510Os.8476.1.S1_at11/113+10945631..10948614ATP-dependent Clp protease proteolytic subunit 1, putative, expressed
LOC_Os03g19520Os.5359.1.S1_at11/113+10949596..10958074cyclin, putative, expressed
LOC_Os03g19530Os.54397.1.S1_at11/113+10963043..10967232DEAD/DEAH box helicase family protein, expressed
LOC_Os03g19530Os.26950.1.A1_s_at11/113+10963043..10967232DEAD/DEAH box helicase family protein, expressed
LOC_Os03g19530Os.28943.1.S1_x_at1/113+10963043..10967232DEAD/DEAH box helicase family protein, expressed
LOC_Os03g19540Os.53023.1.S1_at10/113+10967883..10969026expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004840molecular_functionubiquitin conjugating enzyme activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14794.1.S1_at--196--7691Chr03:10944088..10944112 (25 bp)
GGGTTAGCAACCATTCAAGGGCCAA
LOC_Os03g19500
Os.14794.1.S1_at--85--2791Chr03:10944134..10944158 (25 bp)
AAGAGTTGCTCCAACGCCACAGAAT
LOC_Os03g19500
Os.14794.1.S1_at--464--3311Chr03:10944151..10944175 (25 bp)
CACAGAATCCTGTTGTTGCAATCCA
LOC_Os03g19500
Os.14794.1.S1_at--743--5651Chr03:10944189..10944213 (25 bp)
GACAGATTATTGACCTTGGCTGCAT
LOC_Os03g19500
Os.14794.1.S1_at--664--10871Chr03:10944204..10944228 (25 bp)
TTGGCTGCATTTGGACTCACTCTTG
LOC_Os03g19500
Os.14794.1.S1_at--456--2011Chr03:10944222..10944246 (25 bp)
ACTCTTGCTATTATGGCCCTTGTGA
LOC_Os03g19500
Os.14794.1.S1_at--928--6451Chr03:10944323..10944347 (25 bp)
GATAAGAGCTATACTACCCCATTCG
LOC_Os03g19500
Os.14794.1.S1_at--788--5891Chr03:10944354..10944378 (25 bp)
GAGCGGCTGCTATGCTTACCATAAG
LOC_Os03g19500
Os.14794.1.S1_at--479--5191Chr03:10944428..10944452 (25 bp)
GAATTGGTCCATTGGTACTACCCGT
LOC_Os03g19500
Os.14794.1.S1_at--271--7011Chr03:10944442..10944466 (25 bp)
GTACTACCCGTACCTTATTGTATAT
LOC_Os03g19500
Os.14794.1.S1_at--1161--2931Chr03:10944587..10944611 (25 bp)
AATGGCCAGCGATCCGTTTGTTCTT
LOC_Os03g19500
Target Sequence 
GGGTTAGCAACCATTCAAGGGCCAACTTGAGCAGAGAAAACATTCCAAGAGTTGCTCCAACGCCACAGAATCCTGTTGTT
GCAATCCAGAAGCCAAAGCATGACAGATTATTGACCTTGGCTGCATTTGGACTCACTCTTGCTATTATGGCCCTTGTGAT
CAAGAAGTTCTTCAAAATCAATGGTNTGGCCGGTTACATTGAGGGCAAGTTTTAGGTAGGTTTGTGCATAGATTTGATAA
GAGCTATACTACCCCATTCGGTGTCTGAGCGGCTGCTATGCTTACCATAAGTTATAAACCCCTAAGAATTGTAAATGGCT
GTTTAGTTATAGACGAAGTTGAATTGGTCCATTGGTACTACCCGTACCTTATTGTATATGCAGTACACCTGANGAAAATC
GTTCTAAGGTCTTACATGATGTGCACAATTGTATATGCGGTACTCATGAAAATCATTACAAGATATTACATGATGTGCGC
AACTGCACGTATGTTGTGCAATGGCCAGCGATCCGTTTGTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14794.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis