Browse Element(s) Details


Os.53023.1.S1_at

Description gb:AK070495.1
DB_XREF= gi:32980519
TID=Os.53023.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53023 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023052A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023052A01, full insert sequence.
FL= gb:AK070495.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1954010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19500Os.14794.1.S1_at11/113+10941734..10944621ubiquitinating enzyme, putative, expressed
LOC_Os03g19510Os.8476.1.S1_at11/113+10945631..10948614ATP-dependent Clp protease proteolytic subunit 1, putative, expressed
LOC_Os03g19520Os.5359.1.S1_at11/113+10949596..10958074cyclin, putative, expressed
LOC_Os03g19530Os.54397.1.S1_at11/113+10963043..10967232DEAD/DEAH box helicase family protein, expressed
LOC_Os03g19530Os.26950.1.A1_s_at11/113+10963043..10967232DEAD/DEAH box helicase family protein, expressed
LOC_Os03g19530Os.28943.1.S1_x_at1/113+10963043..10967232DEAD/DEAH box helicase family protein, expressed
LOC_Os03g19540Os.53023.1.S1_at10/113+10967883..10969026expressed protein
LOC_Os03g19550OsAffx.3277.1.S1_s_at11/113+10970060..10971339expressed protein
LOC_Os03g19560Os.19474.1.S1_a_at11/113+10971683..10976387TPR Domain containing protein, expressed
LOC_Os03g19570OsAffx.12938.1.S1_at11/113+10977833..10985302Fip1 motif family protein, expressed
LOC_Os03g19570Os.7345.1.S1_x_at11/113+10977833..10985302Fip1 motif family protein, expressed
LOC_Os03g19580Os.6884.1.S1_at11/113+10986381..10990714expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53023.1.S1_at--250--2691Chr03:10968690..10968714 (25 bp)
AAGCGGCGCGTCGTGCAGTTGCTCA
LOC_Os03g19540
Os.53023.1.S1_at--81--3751Chr03:10968797..10968821 (25 bp)
CTCTCCTTGGTTCTTACTAGTAGTA
LOC_Os03g19540
Os.53023.1.S1_at--829--2011Chr03:10968812..10968836 (25 bp)
ACTAGTAGTACTAATCACCGCCAGT
LOC_Os03g19540
Os.53023.1.S1_at--762--371Chr03:10968825..10968849 (25 bp)
ATCACCGCCAGTACTAAGTTGCATT
LOC_Os03g19540
Os.53023.1.S1_at--37--10411Chr03:10968858..10968882 (25 bp)
TTTTGGGTTGTGCTCAGCTTAGCTC
LOC_Os03g19540
Os.53023.1.S1_at--1136--1551Chr03:10968873..10968897 (25 bp)
AGCTTAGCTCTGGTGTTTAAAGTTC
LOC_Os03g19540
Os.53023.1.S1_at--546--6591Chr03:10968899..10968923 (25 bp)
GTTGACGTCCTACATTTTGCTTTAC
LOC_Os03g19540
Os.53023.1.S1_at--929--10271Chr03:10968914..10968938 (25 bp)
TTTGCTTTACCGCTGGTCTGTAAAT
LOC_Os03g19540
Os.53023.1.S1_at--859--171Chr03:10968937..10968961 (25 bp)
ATTTTACCGGCTTAGATGAATCCAT
LOC_Os03g19540
Os.53023.1.S1_at--245--7951Chr03:10968972..10968996 (25 bp)
GGATCAAACCTAACATGCTTACTCA
LOC_Os03g19540
Os.53023.1.S1_at--985--9831NONE
TAAAGCTGTTTGCTGTTTCGTGGGT
NONE
Target Sequence 
AAGCGGCGCGTCGTGCAGTTGCTCACGCTCCCGTCCGTCGAGAACTTGGCGGCCACCGCCTGACGGAGCCCGGGGCTCCT
CCATCTGCAGGGCGGCGACGCCATGGCCTCTCCTTGGTTCTTACTAGTAGTACTAATCACCGCCAGTACTAAGTTGCATT
AGTGTTTGTTTTGGGTTGTGCTCAGCTTAGCTCTGGTGTTTAAAGTTCAGTTGACGTCCTACATTTTGCTTTACCGCTGG
TCTGTAAATTTTACCGGCTTAGATGAATCCATCCGTGTTAAAGGATCAAACCTAACATGCTTACTCAATTAAAGCTGTTT
GCTGTTTCGTGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53023.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis