Browse Element(s) Details


OsAffx.12938.1.S1_at

Description tigr:9631.m01937
TID=OsAffx.12938.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1957011/11Fip1 motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19520Os.5359.1.S1_at11/113+10949596..10958074cyclin, putative, expressed
LOC_Os03g19530Os.54397.1.S1_at11/113+10963043..10967232DEAD/DEAH box helicase family protein, expressed
LOC_Os03g19530Os.26950.1.A1_s_at11/113+10963043..10967232DEAD/DEAH box helicase family protein, expressed
LOC_Os03g19530Os.28943.1.S1_x_at1/113+10963043..10967232DEAD/DEAH box helicase family protein, expressed
LOC_Os03g19540Os.53023.1.S1_at10/113+10967883..10969026expressed protein
LOC_Os03g19550OsAffx.3277.1.S1_s_at11/113+10970060..10971339expressed protein
LOC_Os03g19560Os.19474.1.S1_a_at11/113+10971683..10976387TPR Domain containing protein, expressed
LOC_Os03g19570OsAffx.12938.1.S1_at11/113+10977833..10985302Fip1 motif family protein, expressed
LOC_Os03g19570Os.7345.1.S1_x_at11/113+10977833..10985302Fip1 motif family protein, expressed
LOC_Os03g19580Os.6884.1.S1_at11/113+10986381..10990714expressed protein
LOC_Os03g19590Os.4601.1.S1_a_at11/113+10998964..11007022Phytochrome B, putative, expressed
LOC_Os03g19600Os.11065.1.A1_at11/113+11009669..11011712retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os03g19600Os.8570.3.S1_s_at11/113+11009669..11011712retrotransposon protein, putative, Ty3-gypsy subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12938.1.S1_at--980--8951Chr03:10978346..10978370 (25 bp)
TGACAGTGAGGGATGTCTTCCTGCT
LOC_Os03g19570
OsAffx.12938.1.S1_at--195--7151Chr03:10978332..10978356 (25 bp)
GTCTTCCTGCTGACAGTGACTTGCA
LOC_Os03g19570
OsAffx.12938.1.S1_at--221--7371Chr03:10978317..10978341 (25 bp)
GTGACTTGCACGGTTCCAAACATAA
LOC_Os03g19570
OsAffx.12938.1.S1_at--731--1131Chr03:10978277..10978301 (25 bp)
AGTGCGTAAACCAAGAGCCTTCCGT
LOC_Os03g19570
OsAffx.12938.1.S1_at--572--10151Chr03:10978253..10978277 (25 bp)
TATCTCGCGCAATCAGGCCTCAGAG
LOC_Os03g19570
OsAffx.12938.1.S1_at--392--971Chr03:10978149..10978173 (25 bp)
AGGACCATCAGGATACTGCTTCCAG
LOC_Os03g19570
OsAffx.12938.1.S1_at--174--4891Chr03:10978132..10978156 (25 bp)
GCTTCCAGAAGCAAGTCTAACCACC
LOC_Os03g19570
OsAffx.12938.1.S1_at--895--10011Chr03:10978080..10978104 (25 bp)
TAGAAGCAAGCTCAGCATGCCAGGG
LOC_Os03g19570
OsAffx.12938.1.S1_at--942--6751Chr03:10977941..10977965 (25 bp)
GTTCAAAGCGTCTATTGCAACCCAA
LOC_Os03g19570
OsAffx.12938.1.S1_at--66--3051Chr03:10977891..10977915 (25 bp)
AATCGTTGGCCGTGACTTGTGATGT
LOC_Os03g19570
OsAffx.12938.1.S1_at--840--8951Chr03:10977863..10977887 (25 bp)
TGACATCAAGAATCAGCGACCTGCA
LOC_Os03g19570
Target Sequence 
TGACAGTGAGGGATGTCTTCCTGCTGACAGTGACTTGCACGGTTCCAAACATAAGAACATACATCAGAAAGTGCGTAAAC
CAAGAGCCTTCCGTATCTCGCGCAATCAGGCCTCAGAGAAATCTGAACAACAAAAACAGCAACATGTGAGCAACAATCAA
GAATATGAAGAGATTGAGGAGGGAGAACTGATCGAACAGGACCATCAGGATACTGCTTCCAGAAGCAAGTCTAACCACCA
AAGAAAAGTAGTACTGAAATCAGTGATAGAAGCAAGCTCAGCATGCCAGGGAGGGGTGATTAATGCAACATCAAAAGACG
CTGATTGCAGCAACGGAGCTACAGGGGAATGTGATAATAAACATATACTTGAGGTAATGAAAAAGATGCAGAAAAGAAGT
GAAAGGTTCAAAGCGTCTATTGCAACCCAAAAGGAGGAAGATGAAGACAGGAAAGAATCGTTGGCCGTGACTTGTGATGT
AGATGACATCAAGAATCAGCGACCTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12938.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis