Browse Element(s) Details


Os.8570.3.S1_s_at

Description gb:AK063617.1
DB_XREF= gi:32973635
TID=Os.8570.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8570 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-106-A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-D12, full insert sequence.
FL= gb:AK063617.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1960011/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19570OsAffx.12938.1.S1_at11/113+10977833..10985302Fip1 motif family protein, expressed
LOC_Os03g19570Os.7345.1.S1_x_at11/113+10977833..10985302Fip1 motif family protein, expressed
LOC_Os03g19580Os.6884.1.S1_at11/113+10986381..10990714expressed protein
LOC_Os03g19590Os.4601.1.S1_a_at11/113+10998964..11007022Phytochrome B, putative, expressed
LOC_Os03g19600Os.11065.1.A1_at11/113+11009669..11011712retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os03g19600Os.8570.3.S1_s_at11/113+11009669..11011712retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os03g19610Os.18212.1.S1_at11/113+11012355..11014375Pectinesterase family protein, expressed
LOC_Os03g19620OsAffx.12939.2.S1_at11/113+11015747..11016130hypothetical protein
LOC_Os03g19630OsAffx.27626.1.S1_at11/113+11018627..11019196Myb-like DNA-binding domain containing protein
LOC_Os03g19640OsAffx.12941.1.S1_at11/113+11024800..11025308hypothetical protein
LOC_Os03g19650Os.26818.2.S1_at11/113+11027321..11032298PPR2, putative, expressed
LOC_Os03g19650Os.26818.1.S1_a_at11/113+11027321..11032298PPR2, putative, expressed
LOC_Os03g19650Os.26818.2.S2_at11/113+11027321..11032298PPR2, putative, expressed
LOC_Os03g19660OsAffx.12942.2.S1_at11/113+11034988..11036603hypothetical protein
LOC_Os03g19660OsAffx.12942.3.S1_at10/113+11034988..11036603hypothetical protein
LOC_Os03g19660OsAffx.12942.3.S1_x_at8/113+11034988..11036603hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8570.3.S1_s_at--94--3991Chr03:11011429..11011453 (25 bp)
CGGGAAGCTGTGAGAAGTAATGCAT
LOC_Os03g19600
Os.8570.3.S1_s_at--111--4731Chr03:11011435..11011459 (25 bp)
GCTGTGAGAAGTAATGCATGCACTT
LOC_Os03g19600
Os.8570.3.S1_s_at--1122--1451Chr03:11011441..11011465 (25 bp)
AGAAGTAATGCATGCACTTTGACAT
LOC_Os03g19600
Os.8570.3.S1_s_at--303--4991Chr03:11011450..11011474 (25 bp)
GCATGCACTTTGACATGCATACGTA
LOC_Os03g19600
Os.8570.3.S1_s_at--724--5111Chr03:11011454..11011478 (25 bp)
GCACTTTGACATGCATACGTACTCG
LOC_Os03g19600
Os.8570.3.S1_s_at--140--3671Chr03:11011457..11011481 (25 bp)
CTTTGACATGCATACGTACTCGGTT
LOC_Os03g19600
Os.8570.3.S1_s_at--495--5671Chr03:11011461..11011485 (25 bp)
GACATGCATACGTACTCGGTTGTAT
LOC_Os03g19600
Os.8570.3.S1_s_at--964--9931Chr03:11011469..11011493 (25 bp)
TACGTACTCGGTTGTATGATGCATA
LOC_Os03g19600
Os.8570.3.S1_s_at--932--4011Chr03:11011471..11011495 (25 bp)
CGTACTCGGTTGTATGATGCATATA
LOC_Os03g19600
Os.8570.3.S1_s_at--212--6331Chr03:11011486..11011510 (25 bp)
GATGCATATAGATGGTTATACATAC
LOC_Os03g19600
Os.8570.3.S1_s_at--776--3431Chr03:11011520..11011544 (25 bp)
CAGATATACTATATGATTGGCTAAT
LOC_Os03g19600
Target Sequence 
CGGGAAGCTGTGAGAAGTAATGCATGCACTTTGACATGCATACGTACTCGGTTGTATGATGCATATAGATGGTTATACAT
ACATATATATACAGATATACTATATGATTGGCTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8570.3.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis