Browse Element(s) Details


Os.18212.1.S1_at

Description gb:AY343494.2
DB_XREF= gi:39653368
TID=Os.18212.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18212 (NCBI UniGene Cluster)
DEF=Oryza sativa (indica cultivar-group) putative pectinesterase mRNA, complete cds.
PROD=putative pectinesterase
FL= gb:AK100728.1 gb:AY343494.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1961011/11Pectinesterase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19580Os.6884.1.S1_at11/113+10986381..10990714expressed protein
LOC_Os03g19590Os.4601.1.S1_a_at11/113+10998964..11007022Phytochrome B, putative, expressed
LOC_Os03g19600Os.11065.1.A1_at11/113+11009669..11011712retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os03g19600Os.8570.3.S1_s_at11/113+11009669..11011712retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os03g19610Os.18212.1.S1_at11/113+11012355..11014375Pectinesterase family protein, expressed
LOC_Os03g19620OsAffx.12939.2.S1_at11/113+11015747..11016130hypothetical protein
LOC_Os03g19630OsAffx.27626.1.S1_at11/113+11018627..11019196Myb-like DNA-binding domain containing protein
LOC_Os03g19640OsAffx.12941.1.S1_at11/113+11024800..11025308hypothetical protein
LOC_Os03g19650Os.26818.2.S1_at11/113+11027321..11032298PPR2, putative, expressed
LOC_Os03g19650Os.26818.1.S1_a_at11/113+11027321..11032298PPR2, putative, expressed
LOC_Os03g19650Os.26818.2.S2_at11/113+11027321..11032298PPR2, putative, expressed
LOC_Os03g19660OsAffx.12942.2.S1_at11/113+11034988..11036603hypothetical protein
LOC_Os03g19660OsAffx.12942.3.S1_at10/113+11034988..11036603hypothetical protein
LOC_Os03g19660OsAffx.12942.3.S1_x_at8/113+11034988..11036603hypothetical protein
LOC_Os03g19670Os.51091.1.S1_at11/113+11038498..11040989GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0030599molecular_functionpectinesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18212.1.S1_at--821--9571Chr03:11013192..11013216 (25 bp)
TCTTCGTGAAGCCTGACCGGCGGAC
LOC_Os03g19610
Os.18212.1.S1_at--907--7971Chr03:11012834..11012992 (25 bp)
GGATCCACCGACCACGTGATGCTCG
LOC_Os03g19610
Os.18212.1.S1_at--240--6071Chr03:11012807..11012831 (25 bp)
GAGTTCAACTGCACCGGGCCGGGCT
LOC_Os03g19610
Os.18212.1.S1_at--490--9291Chr03:11012783..11012807 (25 bp)
TCCGAAGCGACGAAGCGCGAGCCGT
LOC_Os03g19610
Os.18212.1.S1_at--974--1211Chr03:11012725..11012749 (25 bp)
AGTTCATCAACATCGACTTCATCAA
LOC_Os03g19610
Os.18212.1.S1_at--964--9591Chr03:11012707..11012731 (25 bp)
TCATCAACGGCAAGGAGTGGCTCCC
LOC_Os03g19610
Os.18212.1.S1_at--180--8371Chr03:11012682..11012706 (25 bp)
GGCGTACTACTACTGATCATATCCA
LOC_Os03g19610
Os.18212.1.S1_at--1115--9811Chr03:11012638..11012662 (25 bp)
TAACATGTATGTGCGTGTGCATGCA
LOC_Os03g19610
Os.18212.1.S1_at--95--4971Chr03:11012620..11012644 (25 bp)
GCATGCATGCTCTGGGCCGGCTAGC
LOC_Os03g19610
Os.18212.1.S1_at--748--3911Chr03:11012603..11012627 (25 bp)
CGGCTAGCCGTAACCATGGTGTCAA
LOC_Os03g19610
Os.18212.1.S1_at--577--2991Chr03:11012563..11012587 (25 bp)
AATCGAAACGGAAGCGCACTGGAAC
LOC_Os03g19610
Target Sequence 
TCTTCGTGAAGCCTGACCGGCGGACGGAGATCAAGGGNTCCATCACGGCGCAGAACCGCAAGCANGAGGACGGCAGCGGC
TTCGTCTTCATCAAGGGCAAGGTGTACGGCGTCGGGCAGGTGTACCTGGGCCGCGCCAACGAGGCCTACTCGCGCGTCAT
CTTCGCCGACACCTACCTCTCCAAGACCATCAACCCGGCCGGCTGGACCAGCTACGGCTACACCGGATCCACCGACCACG
TGATGCTCGGGGAGTTCAACTGCACCGGGCCGGGCTCCGAAGCGACGAAGCGCGAGCCGTGGTCGCGGCAGCTCACCCAG
GAGGAGGCCGACAAGTTCATCAACATCGACTTCATCAACGGCAAGGAGTGGCTCCCGGCGTACTACTACTGATCATATCC
AACCAAAAAGAGAAACGTAGTAACATGTATGTGCGTGTGCATGCATGCTCTGGGCCGGCTAGCCGTAACCATGGTGTCAA
GAGTTCTAAACTTCTAATCGAAACGGAAGCGCACTGGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18212.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis