Browse Element(s) Details


OsAffx.12942.2.S1_at

Description tigr:9631.m01948
TID=OsAffx.12942.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1966011/11hypothetical protein
LOC_Os08g164901/11hypothetical protein
LOC_Os02g143601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g351101/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19600Os.11065.1.A1_at11/113+11009669..11011712retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os03g19600Os.8570.3.S1_s_at11/113+11009669..11011712retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os03g19610Os.18212.1.S1_at11/113+11012355..11014375Pectinesterase family protein, expressed
LOC_Os03g19620OsAffx.12939.2.S1_at11/113+11015747..11016130hypothetical protein
LOC_Os03g19630OsAffx.27626.1.S1_at11/113+11018627..11019196Myb-like DNA-binding domain containing protein
LOC_Os03g19640OsAffx.12941.1.S1_at11/113+11024800..11025308hypothetical protein
LOC_Os03g19650Os.26818.2.S1_at11/113+11027321..11032298PPR2, putative, expressed
LOC_Os03g19650Os.26818.1.S1_a_at11/113+11027321..11032298PPR2, putative, expressed
LOC_Os03g19650Os.26818.2.S2_at11/113+11027321..11032298PPR2, putative, expressed
LOC_Os03g19660OsAffx.12942.2.S1_at11/113+11034988..11036603hypothetical protein
LOC_Os03g19660OsAffx.12942.3.S1_at10/113+11034988..11036603hypothetical protein
LOC_Os03g19660OsAffx.12942.3.S1_x_at8/113+11034988..11036603hypothetical protein
LOC_Os03g19670Os.51091.1.S1_at11/113+11038498..11040989GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g19680Os.27994.1.A1_at11/113+11047829..11049914enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os03g19690OsAffx.25146.1.S1_at11/113+11050827..11059946expressed protein
LOC_Os03g19690Os.7107.1.S1_x_at11/113+11050827..11059946expressed protein
LOC_Os03g19700Os.56274.1.S1_at11/113+11060503..11062018expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12942.2.S1_at--569--5111Chr03:11035144..11035168 (25 bp)
GCACTTGGCTACATCGCTCAGAGGA
LOC_Os03g19660
OsAffx.12942.2.S1_at--631--2071Chr03:11035146..11035170 (25 bp)
ACTTGGCTACATCGCTCAGAGGATC
LOC_Os03g19660
OsAffx.12942.2.S1_at--601--4731Chr03:11035267..11035291 (25 bp)
GCTGTGCTGCCGTCCGAACGGCTCG
LOC_Os03g19660
OsAffx.12942.2.S1_at--157--8431Chr03:11036211..11036235 (25 bp)
GGCCGGCAGACCTTACGATTTCGAA
LOC_Os03g19660
OsAffx.12942.2.S1_at--1085--5831Chr03:11036219..11036243 (25 bp)
GACCTTACGATTTCGAACACTGCGA
LOC_Os03g19660
OsAffx.12942.2.S1_at--618--9931Chr03:11036224..11036248 (25 bp)
TACGATTTCGAACACTGCGAAGAAA
LOC_Os03g19660
OsAffx.12942.2.S1_at--1160--2391Chr03:11036247..11036271 (25 bp)
AAACAGCAGGTCGATTGTAACCACT
LOC_Os03g19660
OsAffx.12942.2.S1_at--319--7811Chr03:11036255..11036279 (25 bp)
GGTCGATTGTAACCACTGTGGCACT
LOC_Os03g19660
OsAffx.12942.2.S1_at--2--9811Chr03:11036264..11036288 (25 bp)
TAACCACTGTGGCACTAGTTTTCAC
LOC_Os03g19660
OsAffx.12942.2.S1_at--1046--8651Chr03:11036271..11036295 (25 bp)
TGTGGCACTAGTTTTCACACCGAGA
LOC_Os03g19660
OsAffx.12942.2.S1_at--546--78727Chr12:23770841..23770988 (25 bp)
GGTTACGGATAAGGAGTTCTACTCG
NONE
Target Sequence 
GCACTTGGCTACATCGCTCAGAGGATCTTCGCGCGGTTCATGGCCATTACCAAGCTCACGCTCCGCTGCGCCCAGGGCTC
CGGGACGGACAGCCTCTCTGACGACGGGGCACGCCATGTGGTCGCTGTGCTGCCGTCCGAACGGCTCGCCAGGCTCAAGC
TCCGCGGCCTTCGGGGCCGGCAGACCTTACGATTTCGAACACTGCGAAGAAAACAGCAGGTCGATTGTAACCACTGTGGC
ACTAGTTTTCACACCGAGATCGACCAGATGAGAGCGACAACAATTCCGATATCAGAAGTCGCGATCGATAACATGAGCTC
ATTTAAGCAGAAGTCGGGGGCTACTGTCAGGGTTACGGATAAGGAGTTCTACTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12942.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis