Browse Element(s) Details


Os.7107.1.S1_x_at

Description gb:AK068123.1
DB_XREF= gi:32978141
TID=Os.7107.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7107 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013131A22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013131A22, full insert sequence.
FL= gb:AK068123.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1969011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19650Os.26818.2.S1_at11/113+11027321..11032298PPR2, putative, expressed
LOC_Os03g19650Os.26818.1.S1_a_at11/113+11027321..11032298PPR2, putative, expressed
LOC_Os03g19650Os.26818.2.S2_at11/113+11027321..11032298PPR2, putative, expressed
LOC_Os03g19660OsAffx.12942.2.S1_at11/113+11034988..11036603hypothetical protein
LOC_Os03g19660OsAffx.12942.3.S1_at10/113+11034988..11036603hypothetical protein
LOC_Os03g19660OsAffx.12942.3.S1_x_at8/113+11034988..11036603hypothetical protein
LOC_Os03g19670Os.51091.1.S1_at11/113+11038498..11040989GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g19680Os.27994.1.A1_at11/113+11047829..11049914enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os03g19690OsAffx.25146.1.S1_at11/113+11050827..11059946expressed protein
LOC_Os03g19690Os.7107.1.S1_x_at11/113+11050827..11059946expressed protein
LOC_Os03g19700Os.56274.1.S1_at11/113+11060503..11062018expressed protein
LOC_Os03g19710OsAffx.25147.1.S1_at11/113+11067059..11069406hypothetical protein
LOC_Os03g19710OsAffx.31861.1.S1_at2/113+11067059..11069406hypothetical protein
LOC_Os03g19720Os.6965.1.S1_at11/113+11072407..11073391EF hand family protein, expressed
LOC_Os03g19724Os.51868.1.S1_at11/113+11073421..11074496expressed protein
LOC_Os03g19730Os.51868.2.S1_at10/113+11073665..11074738expressed protein
LOC_Os03g19740OsAffx.25148.1.S1_at11/113+11076256..11076730hypothetical protein
LOC_Os03g19750OsAffx.30515.4.S1_x_at11/113+11077913..11079986hAT family dimerisation domain containing protein
LOC_Os03g19750OsAffx.30515.4.S1_at11/113+11077913..11079986hAT family dimerisation domain containing protein
LOC_Os03g19750OsAffx.30515.1.S1_x_at3/113+11077913..11079986hAT family dimerisation domain containing protein
LOC_Os03g19750OsAffx.30515.2.S1_x_at2/113+11077913..11079986hAT family dimerisation domain containing protein
LOC_Os03g19750OsAffx.30515.5.S1_x_at2/113+11077913..11079986hAT family dimerisation domain containing protein
LOC_Os03g19750OsAffx.30515.5.S1_at1/113+11077913..11079986hAT family dimerisation domain containing protein
LOC_Os03g19760Os.20461.1.S2_s_at11/113+11083453..11101280HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os03g19760Os.20461.1.S1_at10/113+11083453..11101280HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os03g19760Os.54720.1.S1_at1/113+11083453..11101280HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7107.1.S1_x_at--551--8771Chr03:11059452..11059476 (25 bp)
TGTTTACGGAGGGATCCTTCTGGCT
LOC_Os03g19690
Os.7107.1.S1_x_at--135--7151Chr03:11059486..11059510 (25 bp)
GTCTACTCTTTGGTTATTTTCTTCT
LOC_Os03g19690
Os.7107.1.S1_x_at--213--1151Chr03:11059518..11059542 (25 bp)
AGTCCGCTAATTCACATGCGTCCAG
LOC_Os03g19690
Os.7107.1.S1_x_at--812--9131Chr03:11059626..11059650 (25 bp)
TGCGATATGCAAGGTGTGCCCGGCC
LOC_Os03g19690
Os.7107.1.S1_x_at--107--7291Chr03:11059641..11059665 (25 bp)
GTGCCCGGCCTCATAAGGATGTCAA
LOC_Os03g19690
Os.7107.1.S1_x_at--960--7991Chr03:11059657..11059681 (25 bp)
GGATGTCAATCTGCATTCAGCCATG
LOC_Os03g19690
Os.7107.1.S1_x_at--374--4891Chr03:11059710..11059734 (25 bp)
GCTTTCTCGGCACAGTTTTGTCTAT
LOC_Os03g19690
Os.7107.1.S1_x_at--990--5271Chr03:11059737..11059761 (25 bp)
GAATGTTTGCTCTTTAGTACCTACA
LOC_Os03g19690
Os.7107.1.S1_x_at--452--6971Chr03:11059753..11059777 (25 bp)
GTACCTACAGGCAACCCCATAGTTA
LOC_Os03g19690
Os.7107.1.S1_x_at--1090--9751Chr03:11059839..11059863 (25 bp)
TAATGCAGGCCATTTACGGTTTTCC
LOC_Os03g19690
Os.7107.1.S1_x_at--21--6331Chr03:11059920..11059944 (25 bp)
GATGCAAACAATTGTTTTCCTTTCT
LOC_Os03g19690
Target Sequence 
TGTTTACGGAGGGATCCTTCTGGCTGGNATTTNCTNGTCTACTCTTTGGTTATTTTCTTCTNCTTCNCNAGTCCGCTAAT
TCACATGCGTCCAGATGAAGATGACCCTGNAATTNCTCTCTAGTATGACAAGATGGCTAAGCATGATAGAATTTGAAACG
ATTGCTGAAAAGCTGTNCACTGCGATATGCAAGGTGTGCCCGGCCTCATAAGGATGTCAATCTGCATTCAGCCATGACTA
GACAATCTGCTGTATACGTTGGGGGCTTTCTCGGCACAGTTTTGTCTATGAGAATGTTTGCTCTTTAGTACCTACAGGCA
ACCCCATAGTTAGATGNATTCATTCGGCCATCATAAATGGCCGATATAATCCAGAGGGGAGTTCAGATAAGGTCTAATGC
AGGCCATTTACGGTTTTCCCCTTTGCCGGTATGTTACGAAAAACCTGGTATGTTAATAAAACCCATAATCCTCATGATGC
AAACAATTGTTTTCCTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7107.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis