Browse Element(s) Details


OsAffx.30515.1.S1_x_at

Description tigr:9638.m02475
TID=OsAffx.30515.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hAT family dimerisation domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2907011/11hAT family dimerisation domain containing protein
LOC_Os12g164903/11hAT family dimerisation domain containing protein, expressed
LOC_Os03g197503/11hAT family dimerisation domain containing protein
LOC_Os02g294103/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29010NANA10+14789248..14792157transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g29020Os.24931.1.S1_at11/1110+14794995..14796062MATH domain containing protein
LOC_Os10g29020Os.46854.1.S1_x_at1/1110+14794995..14796062MATH domain containing protein
LOC_Os10g29020Os.46854.2.S1_x_at1/1110+14794995..14796062MATH domain containing protein
LOC_Os10g29040Os.43567.1.S1_x_at1/1110+14803088..14806229hypothetical protein
LOC_Os10g29050Os.46854.1.S1_x_at11/1110+14809052..14810752BTB/POZ domain containing protein, expressed
LOC_Os10g29050Os.46854.2.S1_x_at8/1110+14809052..14810752BTB/POZ domain containing protein, expressed
LOC_Os10g29060OsAffx.20328.1.S1_x_at11/1110+14812322..14813638hypothetical protein
LOC_Os10g29060OsAffx.20328.1.S1_at11/1110+14812322..14813638hypothetical protein
LOC_Os10g29070OsAffx.30515.1.S1_at11/1110+14814315..14816645hAT family dimerisation domain containing protein
LOC_Os10g29070OsAffx.30515.1.S1_x_at11/1110+14814315..14816645hAT family dimerisation domain containing protein
LOC_Os10g29070OsAffx.30515.4.S1_x_at6/1110+14814315..14816645hAT family dimerisation domain containing protein
LOC_Os10g29070OsAffx.30515.2.S1_x_at3/1110+14814315..14816645hAT family dimerisation domain containing protein
LOC_Os10g29070OsAffx.30515.5.S1_x_at2/1110+14814315..14816645hAT family dimerisation domain containing protein
LOC_Os10g29070OsAffx.30515.5.S1_at1/1110+14814315..14816645hAT family dimerisation domain containing protein
LOC_Os10g29090NANA10+14821852..14826830retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g29100OsAffx.20327.1.S1_at11/1110+14837382..14838491BTB/POZ domain containing protein
LOC_Os10g29110Os.46820.1.S1_at10/1110+14839923..14841488BTB/POZ domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30515.1.S1_x_at--1013--5892Chr10:14814851..14814875 (25 bp)
GAGCTCTATAGGGTTTTCCGTCTGT
LOC_Os10g29070
OsAffx.30515.1.S1_x_at--716--4012Chr10:14814833..14814857 (25 bp)
CGTCTGTACCGAACCAAGCTTGGTG
LOC_Os10g29070
OsAffx.30515.1.S1_x_at--943--3234Chr12:9440840..9440864 (25 bp)
CAAGCTTGGTGGTACTCCCCGAGTT
LOC_Os12g16490
OsAffx.30515.1.S1_x_at--367--5391Chr10:14814741..14814765 (25 bp)
GAAGCAGCATACAGGCAAGGACCAA
LOC_Os10g29070
OsAffx.30515.1.S1_x_at--336--3973Chr03:11079739..11079763 (25 bp)
CGGATTCAGAGCTTAACCACTACCT
LOC_Os03g19750
OsAffx.30515.1.S1_x_at--652--8852Chr12:9441031..9441050 (20 bp)
TGATCCGACGCTTGATGGCGACGAT
LOC_Os12g16490
OsAffx.30515.1.S1_x_at--1023--1874Chr11:14493952..14493974 (23 bp)
ACGATGTCGATCTCCTTGGGTGGTG
NONE
OsAffx.30515.1.S1_x_at--653--5471Chr10:14814574..14814598 (25 bp)
GAACTCTTCCTATGTTAGCTCACTT
LOC_Os10g29070
OsAffx.30515.1.S1_x_at--110--4813Chr12:9441111..9441135 (25 bp)
GCTCGAGATATTCTTCTGGTTCCGG
LOC_Os12g16490
OsAffx.30515.1.S1_x_at--359--9291Chr10:14814518..14814542 (25 bp)
TCCGTTTCTTCCGAGCAAGCATTCA
LOC_Os10g29070
OsAffx.30515.1.S1_x_at--162--5511Chr10:14814394..14814418 (25 bp)
GAACACAACACCGTCTAGATGATCA
LOC_Os10g29070
Target Sequence 
GAGCTCTATAGGGTTTTCCGTCTGTACCGAACCAAGCTTGGTGGTACTCCCCGAGTTCCTGAGCAGACCTCACAAAAGAA
AGCAAGCAAGTCAAGTGCACTAAATTTGTGGAAGCAGCATACAGGCAAGGACCAAGCCTCTCCATCCTCACAGAACAAAT
CAACATGGAACCCGGATTCAGAGCTTAACCACTACCTCGTCACCGATCATACTGAGCATGATCCGACGCTTGATGGCGAC
GATGTCGATCTCCTTGGGTGGTGGAAAGAGAAAGAGCGAACTCTTCCTATGTTAGCTCACTTTGCTCGAGATATTCTTCT
GGTTCCGGCCTCCTCCGTTTCTTCCGAGCAAGCATTCAGCGCTACTGGAAGAATTATTGAAGAACGAAGGTCATGCCTAA
CACCCGAGACGGTTGAGTCAATCTTTTGTCTTAAAGACTGGATGAAAGCAGATGAACGAACACAACACCGTCTAGATGAT
CA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30515.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis