Browse Element(s) Details


OsAffx.20328.1.S1_at

Description tigr:9638.m02474
TID=OsAffx.20328.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2906011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29000NANA10+14787559..14787819transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g29010NANA10+14789248..14792157transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g29020Os.24931.1.S1_at11/1110+14794995..14796062MATH domain containing protein
LOC_Os10g29020Os.46854.1.S1_x_at1/1110+14794995..14796062MATH domain containing protein
LOC_Os10g29020Os.46854.2.S1_x_at1/1110+14794995..14796062MATH domain containing protein
LOC_Os10g29040Os.43567.1.S1_x_at1/1110+14803088..14806229hypothetical protein
LOC_Os10g29050Os.46854.1.S1_x_at11/1110+14809052..14810752BTB/POZ domain containing protein, expressed
LOC_Os10g29050Os.46854.2.S1_x_at8/1110+14809052..14810752BTB/POZ domain containing protein, expressed
LOC_Os10g29060OsAffx.20328.1.S1_x_at11/1110+14812322..14813638hypothetical protein
LOC_Os10g29060OsAffx.20328.1.S1_at11/1110+14812322..14813638hypothetical protein
LOC_Os10g29070OsAffx.30515.1.S1_at11/1110+14814315..14816645hAT family dimerisation domain containing protein
LOC_Os10g29070OsAffx.30515.1.S1_x_at11/1110+14814315..14816645hAT family dimerisation domain containing protein
LOC_Os10g29070OsAffx.30515.4.S1_x_at6/1110+14814315..14816645hAT family dimerisation domain containing protein
LOC_Os10g29070OsAffx.30515.2.S1_x_at3/1110+14814315..14816645hAT family dimerisation domain containing protein
LOC_Os10g29070OsAffx.30515.5.S1_x_at2/1110+14814315..14816645hAT family dimerisation domain containing protein
LOC_Os10g29070OsAffx.30515.5.S1_at1/1110+14814315..14816645hAT family dimerisation domain containing protein
LOC_Os10g29090NANA10+14821852..14826830retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g29100OsAffx.20327.1.S1_at11/1110+14837382..14838491BTB/POZ domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20328.1.S1_at--618--7191Chr10:14813549..14813573 (25 bp)
GTCGGATGGGAAGAGCATCGCCACA
LOC_Os10g29060
OsAffx.20328.1.S1_at--796--791Chr10:14813544..14813568 (25 bp)
ATGGGAAGAGCATCGCCACACATTC
LOC_Os10g29060
OsAffx.20328.1.S1_at--1110--2771Chr10:14813539..14813563 (25 bp)
AAGAGCATCGCCACACATTCCTTCG
LOC_Os10g29060
OsAffx.20328.1.S1_at--954--2171Chr10:14813049..14813551 (25 bp)
ACACATTCCTTCGTTCTTGGCACGG
LOC_Os10g29060
OsAffx.20328.1.S1_at--534--71Chr10:14813407..14813547 (25 bp)
ATTCCTTCGTTCTTGGCACGGCGTC
LOC_Os10g29060
OsAffx.20328.1.S1_at--135--3631Chr10:14813403..14813543 (25 bp)
CTTCGTTCTTGGCACGGCGTCGCCG
LOC_Os10g29060
OsAffx.20328.1.S1_at--1106--7711Chr10:14813345..14813369 (25 bp)
GGGTGGAACACCGAGTGCATCATTC
LOC_Os10g29060
OsAffx.20328.1.S1_at--234--7531Chr10:14813343..14813367 (25 bp)
GTGGAACACCGAGTGCATCATTCCG
LOC_Os10g29060
OsAffx.20328.1.S1_at--1079--5491Chr10:14813340..14813364 (25 bp)
GAACACCGAGTGCATCATTCCGCGT
LOC_Os10g29060
OsAffx.20328.1.S1_at--341--6111Chr10:14813333..14813357 (25 bp)
GAGTGCATCATTCCGCGTCCTCGGC
LOC_Os10g29060
OsAffx.20328.1.S1_at--1040--5091Chr10:14813122..14813146 (25 bp)
GCACGGGCCAAGTCGGCATCAGCGA
LOC_Os10g29060
Target Sequence 
GTCGGATGGGAAGAGCATCGCCACACATTCCTTCGTTCTTGGCACGGCGTCGCCGGTGCTGGAGCGGATGATCGAGCGGG
CACGGCGGGGGTGGAACACCGAGTGCATCATTCCGCGTCCTCGGCGTCTCCTCCGACGCCGTCTTCGCGACTTCGCCTTC
CTCCAGTTGCTGTACGCTTCCAGGGTGACGCCGGAGGACGAGGAGGTGGTGACCGCGCACGGGCCAAGTCGGCATCAGCG
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20328.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis