Browse Element(s) Details


OsAffx.30515.4.S1_x_at

Description tigr:9631.m01956
TID=OsAffx.30515.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hAT family dimerisation domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1975011/11hAT family dimerisation domain containing protein
LOC_Os10g290706/11hAT family dimerisation domain containing protein
LOC_Os02g294104/11hAT family dimerisation domain containing protein
LOC_Os12g164903/11hAT family dimerisation domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19690OsAffx.25146.1.S1_at11/113+11050827..11059946expressed protein
LOC_Os03g19690Os.7107.1.S1_x_at11/113+11050827..11059946expressed protein
LOC_Os03g19700Os.56274.1.S1_at11/113+11060503..11062018expressed protein
LOC_Os03g19710OsAffx.25147.1.S1_at11/113+11067059..11069406hypothetical protein
LOC_Os03g19710OsAffx.31861.1.S1_at2/113+11067059..11069406hypothetical protein
LOC_Os03g19720Os.6965.1.S1_at11/113+11072407..11073391EF hand family protein, expressed
LOC_Os03g19724Os.51868.1.S1_at11/113+11073421..11074496expressed protein
LOC_Os03g19730Os.51868.2.S1_at10/113+11073665..11074738expressed protein
LOC_Os03g19740OsAffx.25148.1.S1_at11/113+11076256..11076730hypothetical protein
LOC_Os03g19750OsAffx.30515.4.S1_x_at11/113+11077913..11079986hAT family dimerisation domain containing protein
LOC_Os03g19750OsAffx.30515.4.S1_at11/113+11077913..11079986hAT family dimerisation domain containing protein
LOC_Os03g19750OsAffx.30515.1.S1_x_at3/113+11077913..11079986hAT family dimerisation domain containing protein
LOC_Os03g19750OsAffx.30515.2.S1_x_at2/113+11077913..11079986hAT family dimerisation domain containing protein
LOC_Os03g19750OsAffx.30515.5.S1_x_at2/113+11077913..11079986hAT family dimerisation domain containing protein
LOC_Os03g19750OsAffx.30515.5.S1_at1/113+11077913..11079986hAT family dimerisation domain containing protein
LOC_Os03g19760Os.20461.1.S2_s_at11/113+11083453..11101280HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os03g19760Os.20461.1.S1_at10/113+11083453..11101280HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os03g19760Os.54720.1.S1_at1/113+11083453..11101280HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30515.4.S1_x_at--588--171Chr03:11079412..11079436 (25 bp)
ATTTTCCCAAATACTTCACCTCTAT
LOC_Os03g19750
OsAffx.30515.4.S1_x_at--305--3674Chr12:9440675..9441112 (25 bp)
CTATACCTCACCTTTATTACTTTGC
LOC_Os12g16490
OsAffx.30515.4.S1_x_at--1074--9075Chr12:9440697..9440721 (25 bp)
TGCTTTGATACTTGATCCTCGCAAA
LOC_Os12g16490
OsAffx.30515.4.S1_x_at--58--3051Chr03:11079488..11079512 (25 bp)
AATCGCCAAGGTTGCCATGAACTCA
LOC_Os03g19750
OsAffx.30515.4.S1_x_at--1012--5891Chr03:11079567..11079591 (25 bp)
GAGCTCTATAGGGTTTTCCATCTGT
LOC_Os03g19750
OsAffx.30515.4.S1_x_at--730--2711Chr03:11079600..11079624 (25 bp)
AAGCTTGGTGGTACTCCTCGAGTTC
LOC_Os03g19750
OsAffx.30515.4.S1_x_at--337--3973Chr03:11079739..11079763 (25 bp)
CGGATTCAGAGCTTAACCACTACCT
LOC_Os03g19750
OsAffx.30515.4.S1_x_at--1024--1874Chr11:14493952..14493974 (23 bp)
ACGATGTCGATCTCCTTGGGTGGTG
NONE
OsAffx.30515.4.S1_x_at--109--4813Chr12:9441111..9441135 (25 bp)
GCTCGAGATATTCTTCTGGTTCCGG
LOC_Os12g16490
OsAffx.30515.4.S1_x_at--945--6832Chr03:11079903..11079927 (25 bp)
GTTTCTTCCGAGCAAGCATTCAGCG
LOC_Os03g19750
OsAffx.30515.4.S1_x_at--465--4951Chr03:11079918..11079942 (25 bp)
GCATTCAGCGTTACTGGAATCATTA
LOC_Os03g19750
Target Sequence 
ATTTTCCCAAATACTTCACCTCTATACCTCACCTTTATTACTTTGCTTTGATACTTGATCCTCGCAAAAAGTTGGAAATC
GCCAAGGTTGCCATGAACTCAATAGGTTATGCAGTGGGGCTTGATTATTCTGAAGCTTTTCAACATGTCAATGATGAGCT
CTATAGGGTTTTCCATCTGTACCGAACCAAGCTTGGTGGTACTCCTCGAGTTCCTGAGCAGACCTCACAAAAGAAAGCAA
GAAAGTCAAGTGCAGTAAATTTGTGGAAGCAGTATATAGGAAACGACCAAGCCTCTCCATCCTCAGAGAACAAATCAACA
TGGAACCCGGATTCAGAGCTTAACCACTACCTCGTCACCAATCATACTAAGCATGATCCGACGCTTGGTGGCGACGATGT
CGATCTCCTTGGGTGGTGGAAAGAGAAAGAGCGAACTCTTCCTGTGTTAGCTCACTTTGCTCGAGATATTCTTCTGGTTC
CGGCCTCCTTCGTTTCTTCCGAGCAAGCATTCAGCGTTACTGGAATCATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30515.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis