Browse Element(s) Details


Os.20461.1.S2_s_at

Description gb:AK120958.1
DB_XREF= gi:37990581
TID=Os.20461.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20461 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-212-F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023039J11, full insert sequence.
FL= gb:AK073167.1 gb:AK103974.1 gb:AK120958.1 gb:AK109395.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1976011/11HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19690OsAffx.25146.1.S1_at11/113+11050827..11059946expressed protein
LOC_Os03g19690Os.7107.1.S1_x_at11/113+11050827..11059946expressed protein
LOC_Os03g19700Os.56274.1.S1_at11/113+11060503..11062018expressed protein
LOC_Os03g19710OsAffx.25147.1.S1_at11/113+11067059..11069406hypothetical protein
LOC_Os03g19710OsAffx.31861.1.S1_at2/113+11067059..11069406hypothetical protein
LOC_Os03g19720Os.6965.1.S1_at11/113+11072407..11073391EF hand family protein, expressed
LOC_Os03g19724Os.51868.1.S1_at11/113+11073421..11074496expressed protein
LOC_Os03g19730Os.51868.2.S1_at10/113+11073665..11074738expressed protein
LOC_Os03g19740OsAffx.25148.1.S1_at11/113+11076256..11076730hypothetical protein
LOC_Os03g19750OsAffx.30515.4.S1_x_at11/113+11077913..11079986hAT family dimerisation domain containing protein
LOC_Os03g19750OsAffx.30515.4.S1_at11/113+11077913..11079986hAT family dimerisation domain containing protein
LOC_Os03g19750OsAffx.30515.1.S1_x_at3/113+11077913..11079986hAT family dimerisation domain containing protein
LOC_Os03g19750OsAffx.30515.2.S1_x_at2/113+11077913..11079986hAT family dimerisation domain containing protein
LOC_Os03g19750OsAffx.30515.5.S1_x_at2/113+11077913..11079986hAT family dimerisation domain containing protein
LOC_Os03g19750OsAffx.30515.5.S1_at1/113+11077913..11079986hAT family dimerisation domain containing protein
LOC_Os03g19760Os.20461.1.S2_s_at11/113+11083453..11101280HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os03g19760Os.20461.1.S1_at10/113+11083453..11101280HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os03g19760Os.54720.1.S1_at1/113+11083453..11101280HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os03g19770NANA3+11105565..11106185hypothetical protein
LOC_Os03g19780Os.23125.1.S1_at11/113+11111969..11113058expressed protein
LOC_Os03g19800NANA3+11125162..11126244hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009231biological_processriboflavin biosynthesis
GO:0003919molecular_functionFMN adenylyltransferase activity
GO:0008531molecular_functionriboflavin kinase activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20461.1.S2_s_at--373--7891Chr03:11100259..11100283 (25 bp)
GGTTCAATGTCAGCTTAGTGCAAAA
LOC_Os03g19760
Os.20461.1.S2_s_at--272--3271Chr03:11100279..11100303 (25 bp)
CAAAACGTTTTTTATGGCTGTCAGC
LOC_Os03g19760
Os.20461.1.S2_s_at--863--8331Chr03:11100294..11100318 (25 bp)
GGCTGTCAGCATGATTTACTTGTGA
LOC_Os03g19760
Os.20461.1.S2_s_at--611--311Chr03:11100323..11100347 (25 bp)
ATACGTTCTCATTTGCAGGAAGCTC
LOC_Os03g19760
Os.20461.1.S2_s_at--782--2371Chr03:11100415..11100439 (25 bp)
AAACTCAGGACAGGCATCACTCAAG
LOC_Os03g19760
Os.20461.1.S2_s_at--786--5771Chr03:11100892..11100916 (25 bp)
GACGAAGTTTGTCTTTACCAATCTG
LOC_Os03g19760
Os.20461.1.S2_s_at--378--9991Chr03:11100907..11100931 (25 bp)
TACCAATCTGTTGCCTTCGATGTCA
LOC_Os03g19760
Os.20461.1.S2_s_at--422--1631Chr03:11100960..11100984 (25 bp)
AGCGCAGATTACTCTTTCCTATTCT
LOC_Os03g19760
Os.20461.1.S2_s_at--208--9911Chr03:11100969..11100993 (25 bp)
TACTCTTTCCTATTCTGTGGTACCA
LOC_Os03g19760
Os.20461.1.S2_s_at--97--9791Chr03:11101122..11101146 (25 bp)
TAAGCTCTTTTTTGGAGGGTGTCTA
LOC_Os03g19760
Os.20461.1.S2_s_at--1093--9111Chr03:11101189..11101213 (25 bp)
TGCTGTATGCTTGACATGCTACCTC
LOC_Os03g19760
Target Sequence 
GGTTCAATGTCAGCTTAGTGCAAAACGTTTTTTATGGCTGTCAGCATGATTTACTTGTGATGATATACGTTCTCATTTGC
AGGAAGCTCGAAGTAAATTTGATGTGGACATAGAACCAGCTGATGCAATTGAGATAGAGCCAGTTAATGGTTTTCTAAAC
TCAGGACAGGCATCACTCAAGTACAGAAGGAAATCTTCATCGTCATCAACGGGAAGGATCAATTGCAAGGTTTACTACTG
CAAAGAAGACGAAGTTTGTCTTTACCAATCTGTTGCCTTCGATGTCAAATTCCGGGAAGAGGCAGTCCCCAGTCCAGCGC
AGATTACTCTTTCCTATTCTGTGGTACCAAGAGATACTTCAAGTAGCGCACAATTAATAGCCGCTGGAAAGAACGGCAAG
GTATAGTTAGATCTAGGGTGATTGTTTTACTGTTAATTCCTGTGCTGATTGTGAATTTGGCTTTAGTGCCAGAAAGGTAA
GCTCTTTTTTGGAGGGTGTCTAAAGTTCCAACTGCCTTTGGATGATGTATATGTTGTAATATAATGCTGTATGCTTGACA
TGCTACCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20461.1.S2_s_at     

Putative homologies in rice

Putative homologies in arabidopsis