Browse Element(s) Details


Os.51868.1.S1_at

Description gb:AK108200.1
DB_XREF= gi:32993409
TID=Os.51868.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51868 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-140-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-140-C11, full insert sequence.
FL= gb:AK108200.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1972411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19680Os.27994.1.A1_at11/113+11047829..11049914enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os03g19690OsAffx.25146.1.S1_at11/113+11050827..11059946expressed protein
LOC_Os03g19690Os.7107.1.S1_x_at11/113+11050827..11059946expressed protein
LOC_Os03g19700Os.56274.1.S1_at11/113+11060503..11062018expressed protein
LOC_Os03g19710OsAffx.25147.1.S1_at11/113+11067059..11069406hypothetical protein
LOC_Os03g19710OsAffx.31861.1.S1_at2/113+11067059..11069406hypothetical protein
LOC_Os03g19720Os.6965.1.S1_at11/113+11072407..11073391EF hand family protein, expressed
LOC_Os03g19724Os.51868.1.S1_at11/113+11073421..11074496expressed protein
LOC_Os03g19730Os.51868.2.S1_at10/113+11073665..11074738expressed protein
LOC_Os03g19740OsAffx.25148.1.S1_at11/113+11076256..11076730hypothetical protein
LOC_Os03g19750OsAffx.30515.4.S1_x_at11/113+11077913..11079986hAT family dimerisation domain containing protein
LOC_Os03g19750OsAffx.30515.4.S1_at11/113+11077913..11079986hAT family dimerisation domain containing protein
LOC_Os03g19750OsAffx.30515.1.S1_x_at3/113+11077913..11079986hAT family dimerisation domain containing protein
LOC_Os03g19750OsAffx.30515.2.S1_x_at2/113+11077913..11079986hAT family dimerisation domain containing protein
LOC_Os03g19750OsAffx.30515.5.S1_x_at2/113+11077913..11079986hAT family dimerisation domain containing protein
LOC_Os03g19750OsAffx.30515.5.S1_at1/113+11077913..11079986hAT family dimerisation domain containing protein
LOC_Os03g19760Os.20461.1.S2_s_at11/113+11083453..11101280HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os03g19760Os.20461.1.S1_at10/113+11083453..11101280HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os03g19760Os.54720.1.S1_at1/113+11083453..11101280HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51868.1.S1_at--19--4651Chr03:11073894..11073918 (25 bp)
GCGTTATGCAGACGGCGGACACCAA
LOC_Os03g19724
Os.51868.1.S1_at--557--6171Chr03:11073722..11073746 (25 bp)
GAGGATCCCGTGTAGTAACCTGCAC
LOC_Os03g19724
Os.51868.1.S1_at--421--7051Chr03:11073708..11073732 (25 bp)
GTAACCTGCACCATGTGAGACTATG
LOC_Os03g19724
Os.51868.1.S1_at--880--7731Chr03:11073680..11073704 (25 bp)
GGTGTGGATTCGTTATGCATCTACA
LOC_Os03g19724
Os.51868.1.S1_at--18--2391Chr03:11073646..11073670 (25 bp)
AAACGAGGGACTTGCACTGCTACCG
LOC_Os03g19724
Os.51868.1.S1_at--87--4511Chr03:11073622..11073646 (25 bp)
GCCCTTACACCTCAATTTTCATAGA
LOC_Os03g19724
Os.51868.1.S1_at--1135--9731Chr03:11073611..11073635 (25 bp)
TCAATTTTCATAGAGCTGCCCAACC
LOC_Os03g19724
Os.51868.1.S1_at--720--5891Chr03:11073599..11073623 (25 bp)
GAGCTGCCCAACCTTTTTATGAAGT
LOC_Os03g19724
Os.51868.1.S1_at--764--8931Chr03:11073547..11073571 (25 bp)
TGCAGTTGGGTTCCTCCTTTTCGAG
LOC_Os03g19724
Os.51868.1.S1_at--926--6331Chr03:11073522..11073546 (25 bp)
GATCTTTCCCAAATTTTCGGTTCAG
LOC_Os03g19724
Os.51868.1.S1_at--1027--7191Chr03:11073432..11073456 (25 bp)
GTCGTCCTCCTATGCAAATGCGAGT
LOC_Os03g19724
Target Sequence 
GCGTTATGCAGACGGCGGACACCAAGGACCTCATCCTCGCCATCCCCAAGCTGGAGTCTGCTGTGTGGAGGTGGTCGCCG
GCCCGGCGCTGGAAAGGGGAAAGTGGGATAGAGTGGAGGTGGTCGCTGAGAATGGGAAAGTAGCAGAGAGAATGGGTTGG
AGTGGTTGGCTTGAGGATCCCGTGTAGTAACCTGCACCATGTGAGACTATGTGTGGTGTGGATTCGTTATGCATCTACAA
GGTAACTCAAACGAGGGACTTGCACTGCTACCGCCCTTACACCTCAATTTTCATAGAGCTGCCCAACCTTTTTATGAAGT
CCAAACTGAAAAAGGATAGGAGTAGACTGCAGTTGGGTTCCTCCTTTTCGAGGATCTTTCCCAAATTTTCGGTTCAGATT
GAAAAAGAAACTTGCTTCAAAAACTGCACCACAGTCCACAGCACACCCTGCTCCTTCGGTCTGTCGTCCTCCTATGCAAA
TGCGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51868.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis