Browse Element(s) Details


OsAffx.30515.5.S1_x_at

Description tigr:9638.m01981
TID=OsAffx.30515.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2327011/11hypothetical protein
LOC_Os10g290702/11hAT family dimerisation domain containing protein
LOC_Os03g197502/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g23240Os.32823.1.S1_x_at2/1110+11791407..11791689hypothetical protein
LOC_Os10g23250OsAffx.18360.1.S1_at11/1110+11801259..11803696hypothetical protein
LOC_Os10g23260OsAffx.18361.1.S1_at11/1110+11812688..11813821hypothetical protein
LOC_Os10g23270OsAffx.30515.5.S1_x_at11/1110+11815379..11816885hypothetical protein
LOC_Os10g23270OsAffx.30515.5.S1_at11/1110+11815379..11816885hypothetical protein
LOC_Os10g23280OsAffx.30516.1.S1_at11/1110+11818655..11819604hypothetical protein
LOC_Os10g23280OsAffx.19669.1.S1_at1/1110+11818655..11819604hypothetical protein
LOC_Os10g23290Os.47463.1.S1_x_at6/1110+11823153..11832831transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g23290Os.14491.2.S1_x_at5/1110+11823153..11832831transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30515.5.S1_x_at--500--6731Chr10:11815839..11816335 (25 bp)
GTTCTAAGTTGAGCATGATTGTTCT
LOC_Os10g23270
OsAffx.30515.5.S1_x_at--546--9533Chr03:11078464..11078951 (25 bp)
TCTAAGTTGAGCATGATTGTTCTGG
LOC_Os03g19750
OsAffx.30515.5.S1_x_at--955--10271Chr10:11815794..11815818 (25 bp)
TTTGCCGTTATGTTCGTATCATAGC
LOC_Os10g23270
OsAffx.30515.5.S1_x_at--1107--9171Chr10:11815792..11815816 (25 bp)
TGCCGTTATGTTCGTATCATAGCAG
LOC_Os10g23270
OsAffx.30515.5.S1_x_at--280--8171Chr10:11815677..11815701 (25 bp)
GGAACACAATGTACCTATTGTTGCG
LOC_Os10g23270
OsAffx.30515.5.S1_x_at--575--2231Chr10:11815672..11815696 (25 bp)
ACAATGTACCTATTGTTGCGACAAT
LOC_Os10g23270
OsAffx.30515.5.S1_x_at--54--6971Chr10:11815667..11815691 (25 bp)
GTACCTATTGTTGCGACAATTAAAA
LOC_Os10g23270
OsAffx.30515.5.S1_x_at--619--10351Chr10:11815558..11815582 (25 bp)
TTTATTCTCACCGATCAGGACTGGG
LOC_Os10g23270
OsAffx.30515.5.S1_x_at--17--971Chr10:11815542..11815566 (25 bp)
AGGACTGGGAGATCGCTACACATGT
LOC_Os10g23270
OsAffx.30515.5.S1_x_at--1099--3891Chr10:11815538..11815562 (25 bp)
CTGGGAGATCGCTACACATGTGCGT
LOC_Os10g23270
OsAffx.30515.5.S1_x_at--722--773Chr03:11079245..11079268 (24 bp)
ATGTGCGTAAATTTCTGAAGCCCTT
LOC_Os03g19750
Target Sequence 
GTTCTAAGTTGAGCATGATTGTTCTGGAGAAATTGTTAAACAAAATTTGCCGTTATGTTCGTATCATAGCAGGTAACACA
GTGGTCAAAGCGAGGTTCCAGGACTACTGTAAAGCGAAGAAGAAACCTGCACGGATGTTTGGCATTGATGTCAAACATAG
GTGGAACACAATGTACCTATTGTTGCGACAATTAAAAGGGTATGAGGAGTTAATTTATGTTTTCATCAATTCGATGCATG
TCAGAATGAAGGATATCGATGACGACGGTGATGGTGAGATTTTTATTCTCACCGATCAGGACTGGGAGATCGCTACACAT
GTGCGTAAATTTCTGAAGCCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30515.5.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis