Browse Element(s) Details


OsAffx.19669.1.S1_at

Description tigr:9640.m01418
TID=OsAffx.19669.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AL050399 serinethreonine kinase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1461010/11Protein kinase domain containing protein
LOC_Os10g232801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g14570Os.12008.3.S1_at3/1112+8314938..8315285hypothetical protein
LOC_Os12g14580OsAffx.7594.1.S1_at11/1112+8325263..8326965Tetraspanin family protein
LOC_Os12g14590OsAffx.7595.1.S1_at11/1112+8332026..8332583hypothetical protein
LOC_Os12g14600OsAffx.8338.1.S1_x_at2/1112+8335097..8336274retrotransposon protein, putative, unclassified
LOC_Os12g14600OsAffx.22240.1.S1_x_at1/1112+8335097..8336274retrotransposon protein, putative, unclassified
LOC_Os12g14600OsAffx.10020.1.S1_x_at1/1112+8335097..8336274retrotransposon protein, putative, unclassified
LOC_Os12g14610OsAffx.19669.1.S1_at10/1112+8338893..8345239Protein kinase domain containing protein
LOC_Os12g14610OsAffx.18976.1.S1_at1/1112+8338893..8345239Protein kinase domain containing protein
LOC_Os12g14610OsAffx.2159.1.S1_at1/1112+8338893..8345239Protein kinase domain containing protein
LOC_Os12g14610OsAffx.18976.1.S1_x_at1/1112+8338893..8345239Protein kinase domain containing protein
LOC_Os12g14630OsAffx.27632.1.S1_at1/1112+8354519..8359757retrotransposon protein, putative, LINE subclass
LOC_Os12g14640Os.46306.1.S1_x_at3/1112+8364611..8370112transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19669.1.S1_at--53--4891Chr12:8340215..8340239 (25 bp)
GCTTTGCGACGAATCTCAACTGAAG
LOC_Os12g14610
OsAffx.19669.1.S1_at--568--4391Chr12:8340131..8340155 (25 bp)
GCCAACCATGCAGGATGTTCTTAAA
LOC_Os12g14610
OsAffx.19669.1.S1_at--30--9891Chr12:8340061..8340085 (25 bp)
TACATCAAACGAGCACGGGCTGCGG
LOC_Os12g14610
OsAffx.19669.1.S1_at--1120--7551NONE
GGGCCGTTGTATTCATCCATAGCAT
NONE
OsAffx.19669.1.S1_at--810--9751Chr12:8339731..8339755 (25 bp)
TAAGGTTGGCCAGGTCTTTTACTGC
LOC_Os12g14610
OsAffx.19669.1.S1_at--773--4571Chr12:8339708..8339732 (25 bp)
GCGCTTGTTGCCAGATGACCGATTA
LOC_Os12g14610
OsAffx.19669.1.S1_at--823--6151Chr12:8339681..8339705 (25 bp)
GAGGTTTTTCCCTATGTGGCATTAA
LOC_Os12g14610
OsAffx.19669.1.S1_at--1062--1415Chr06:24671584..24671604 (21 bp)
AGAAAGATGGTGTCTGCCTCTGTGC
NONE
OsAffx.19669.1.S1_at--423--3151Chr12:8339007..8339031 (25 bp)
AATTCATGCAGTTCCCCTAATGGCA
LOC_Os12g14610
OsAffx.19669.1.S1_at--789--1591Chr12:8338953..8338977 (25 bp)
AGCTCCATTGGCTATCATGCAGGAA
LOC_Os12g14610
OsAffx.19669.1.S1_at--206--951Chr12:8338933..8338957 (25 bp)
AGGAAGGTTCTCAGGCTGCTGGAAT
LOC_Os12g14610
Target Sequence 
GCTTTGCGACGAATCTCAACTGAAGGAGATCAAAAGATGCATGGATATTGGACTGCTCTGTACCCAGAACAAAGCGACAG
AGAGGCCAACCATGCAGGATGTTCTTAAAATGATTCAGGGCAAGAAGAAGGTACCGACCCCCAAGCAACCAGGCTACATC
AAACGAGCACGGGCTGCGGGGCCGTTGTATTCATCCATAGCATTTCTATGTAACCCTAAGGTTGGCCAGGTCTTTTACTG
CGCTTGTTGCCAGATGACCGATTATAGAGGTTTTTCCCTATGTGGCATTAAGAAAGATGGTGTCTGCCTCTGTGCCACTA
AAAAGTTCGAGCCTCCCTCTCTGCCATCGTCAAACTTTATCGCGCTCTCCACACCATTCCGTCCGTTTTTTGTCGTAACG
TATTATCAGTGGGAGGATAAAATGGTGGACACTGGAGTGCAGACACCTCATGCCCCTACTCCAATTCATGCAGTTCCCCT
AATGGCAGTGGCACCACTTGGTGGTTTCCCTACTGCAGCTCCATTGGCTATCATGCAGGAAGGTTCTCAGGCTGCTGGAA
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19669.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis