Browse Element(s) Details


Os.12008.3.S1_at

Description gb:NM_188262.1
DB_XREF= gi:34903607
GEN=P0419B01.17
TID=Os.12008.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.12008 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0419B01.17 (P0419B01.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0419B01.17 (P0419B01.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1017011/11hypothetical protein
LOC_Os06g254604/11hypothetical protein
LOC_Os12g145703/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10140Os.2202.3.S1_x_at11/111+5304217..5321280RNA dependent RNA polymerase family protein, expressed
LOC_Os01g10140Os.2202.2.S1_x_at11/111+5304217..5321280RNA dependent RNA polymerase family protein, expressed
LOC_Os01g10150Os.2203.3.S1_x_at11/111+5325721..5332320protein kinase family protein, putative, expressed
LOC_Os01g10160OsAffx.23181.1.S1_x_at11/111+5333506..5334132hypothetical protein
LOC_Os01g10170Os.12008.3.S1_at11/111+5336246..5336531hypothetical protein
LOC_Os01g10180Os.30696.1.S1_at10/111+5349307..5350409expressed protein
LOC_Os01g10190OsAffx.23182.1.S1_at11/111+5351403..5354507hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12008.3.S1_at--426--9053Chr12:8315003..8315026 (24 bp)
TGCAGATGCGCGTGGTCGCCAGCAA
LOC_Os12g14570
Os.12008.3.S1_at--424--3432Chr04:33882529..33882553 (25 bp)
CAGATGCGCGTGGTCGCCAGCAACG
NONE
Os.12008.3.S1_at--557--4572Chr04:33882534..33882557 (24 bp)
GCGCGTGGTCGCCAGCAACGGAGGG
NONE
Os.12008.3.S1_at--912--7993Chr12:8315093..8315117 (25 bp)
GGATGGCAGGATAATCGAGGTCACC
LOC_Os12g14570
Os.12008.3.S1_at--1063--8253Chr12:8315097..8315121 (25 bp)
GGCAGGATAATCGAGGTCACCGACG
LOC_Os12g14570
Os.12008.3.S1_at--182--673Chr04:33882674..33882698 (25 bp)
ATGAACGCCGGCTGATCGAAATGGG
NONE
Os.12008.3.S1_at--754--5572Chr01:5336445..5336469 (25 bp)
GAAATGGGCGCCACCACCGGAATCG
LOC_Os01g10170
Os.12008.3.S1_at--1002--2971Chr01:5336447..5336471 (25 bp)
AATGGGCGCCACCACCGGAATCGAG
LOC_Os01g10170
Os.12008.3.S1_at--954--1712Chr04:33882703..33882727 (25 bp)
ACCACCGGAATCGAGCTGTGCAGGA
NONE
Os.12008.3.S1_at--219--3372Chr04:33882705..33882729 (25 bp)
CACCGGAATCGAGCTGTGCAGGAAC
NONE
Os.12008.3.S1_at--619--5892Chr04:33882715..33882739 (25 bp)
GAGCTGTGCAGGAACGGACGGCGGA
NONE
Target Sequence 
TGCAGATGCGCGTGGTCGCCAGCAACGGAGGGGTGGAGGATGGCAGGATAATCGAGGTCACCGACGGGGAGATAAAACGG
CGGCGGCAGGATGAACGCCGGCTGATCGAAATGGGCGCCACCACCGGAATCGAGCTGTGCAGGAACGGACGGCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12008.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis