Browse Element(s) Details


OsAffx.23181.1.S1_x_at

Description tigr:9629.m00966
TID=OsAffx.23181.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5725011/11hypothetical protein
LOC_Os01g1016011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57190OsAffx.14455.1.S1_s_at11/114+33854103..33858227Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os04g57190Os.24656.1.S1_at11/114+33854103..33858227Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os04g57190OsAffx.14455.1.S1_at9/114+33854103..33858227Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os04g57200Os.7115.1.S1_a_at11/114+33861558..33862845heavy metal-associated domain containing protein, expressed
LOC_Os04g57210Os.9650.1.A1_at11/114+33864372..33868483Actin family protein, expressed
LOC_Os04g57220Os.22723.1.S1_a_at11/114+33868683..33871611Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os04g57220Os.22723.3.S1_x_at5/114+33868683..33871611Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os04g57230Os.20204.4.S1_at11/114+33872604..33876347regulatory protein RecX containing protein, expressed
LOC_Os04g57230Os.5935.1.S1_at11/114+33872604..33876347regulatory protein RecX containing protein, expressed
LOC_Os04g57240Os.51414.1.S1_at4/114+33876674..33877784hypothetical protein
LOC_Os04g57250OsAffx.23181.1.S1_x_at11/114+33879770..33880396hypothetical protein
LOC_Os04g57260Os.12273.1.S1_at1/114+33882989..33883390expressed protein
LOC_Os04g57270Os.12273.1.S1_at11/114+33885403..33885908expressed protein
LOC_Os04g57280Os.12275.1.S1_at11/114+33887578..33888100expressed protein
LOC_Os04g57290Os.27287.1.S1_at11/114+33891420..33893101F-box domain containing protein, expressed
LOC_Os04g57300Os.38230.1.S1_at11/114+33895065..33897846phosphatidylinositol 3- and 4-kinase family protein, putative, expressed
LOC_Os04g57310Os.15283.1.S1_at11/114+33900474..33904540Uncharacterized conserved protein, putative, expressed
LOC_Os04g57320Os.25587.1.S1_s_at10/114+33903833..33906854Immutans protein, putative, expressed
LOC_Os04g57320Os.25587.1.S1_at9/114+33903833..33906854Immutans protein, putative, expressed
LOC_Os04g57320Os.25587.3.S1_x_at6/114+33903833..33906854Immutans protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23181.1.S1_x_at--250--8634Chr10:1661258..1661282 (25 bp)
TGGGATGAACAATCAACGGCAACAT
NONE
OsAffx.23181.1.S1_x_at--294--2454Chr10:1661265..1661289 (25 bp)
AACAATCAACGGCAACATCAAGATG
NONE
OsAffx.23181.1.S1_x_at--512--2094Chr10:1661279..1661303 (25 bp)
ACATCAAGATGAGGGCGACGTTGCA
NONE
OsAffx.23181.1.S1_x_at--735--694Chr10:1661287..1661311 (25 bp)
ATGAGGGCGACGTTGCATCATCAGC
NONE
OsAffx.23181.1.S1_x_at--577--7574Chr10:1661291..1661315 (25 bp)
GGGCGACGTTGCATCATCAGCCTCT
NONE
OsAffx.23181.1.S1_x_at--360--4493Chr10:1661321..1661345 (25 bp)
GCCGGACTGCCATACAAGCAGCACA
NONE
OsAffx.23181.1.S1_x_at--175--5733Chr10:1661325..1661349 (25 bp)
GACTGCCATACAAGCAGCACATCGT
NONE
OsAffx.23181.1.S1_x_at--626--9854Chr10:1661333..1661359 (25 bp)
TACAAGCAGCACATCGTGGATCCGC
NONE
OsAffx.23181.1.S1_x_at--939--6215Chr10:1661370..1661394 (25 bp)
GAGGCGCCGAGCACGTACGCCGCAG
NONE
OsAffx.23181.1.S1_x_at--1007--3374Chr10:1661392..1661416 (25 bp)
CAGCCGCCACAGGTCGCTGGAGGTA
NONE
OsAffx.23181.1.S1_x_at--323--1892Chr04:33880087..33880111 (25 bp)
ACGATAGAGGTGAACGGGAGGCCCA
LOC_Os04g57250
Target Sequence 
TGGGATGAACAATCAACGGCAACATCAAGATGAGGGCGACGTTGCATCATCAGCCTCTCCTCCGCCGGACTGCCATACAA
GCAGCACATCGTGGATCCGCCGCCCTTGCCGAGGCGCCGAGCACGTACGCCGCAGCCGCCACAGGTCGCTGGAGGTAGAG
AAGGTGGATGGGGCAGAGGGCCGCGAGGGCGCTGGAGGCGATGAACGCGGCGAGGGAGATGGACGGGCGACGGAGGCGAC
GATAGAGGTGAACGGGAGGCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23181.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis