Browse Element(s) Details


Os.25587.1.S1_at

Description gb:AF085174.3
DB_XREF= gi:21105121
GEN=IM1
TID=Os.25587.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25587 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) oxidase (IM1) mRNA, complete cds; nuclear gene for plastid product.
PROD=oxidase
FL= gb:AK067891.1 gb:AF085174.3
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g573209/11Immutans protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57250OsAffx.23181.1.S1_x_at11/114+33879770..33880396hypothetical protein
LOC_Os04g57260Os.12273.1.S1_at1/114+33882989..33883390expressed protein
LOC_Os04g57270Os.12273.1.S1_at11/114+33885403..33885908expressed protein
LOC_Os04g57280Os.12275.1.S1_at11/114+33887578..33888100expressed protein
LOC_Os04g57290Os.27287.1.S1_at11/114+33891420..33893101F-box domain containing protein, expressed
LOC_Os04g57300Os.38230.1.S1_at11/114+33895065..33897846phosphatidylinositol 3- and 4-kinase family protein, putative, expressed
LOC_Os04g57310Os.15283.1.S1_at11/114+33900474..33904540Uncharacterized conserved protein, putative, expressed
LOC_Os04g57320Os.25587.1.S1_s_at10/114+33903833..33906854Immutans protein, putative, expressed
LOC_Os04g57320Os.25587.1.S1_at9/114+33903833..33906854Immutans protein, putative, expressed
LOC_Os04g57320Os.25587.3.S1_x_at6/114+33903833..33906854Immutans protein, putative, expressed
LOC_Os04g57330Os.13987.1.S1_at11/114+33908934..33912073expressed protein
LOC_Os04g57340NANA4+33914656..33915517AP2 domain containing protein, expressed
LOC_Os04g57350Os.18279.1.S1_at11/114+33919168..33923078EH-domain containing protein 1, putative, expressed
LOC_Os04g57360Os.54317.1.S1_at11/114+33923478..33926185expressed protein
LOC_Os04g57360OsAffx.26645.1.S1_at10/114+33923478..33926185expressed protein
LOC_Os04g57370Os.22450.1.S1_at11/114+33929122..33931657Phospholipase/Carboxylesterase family protein, expressed
LOC_Os04g57380Os.57028.1.S1_at11/114+33931853..33933371Phospholipase/Carboxylesterase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009266biological_processresponse to temperature stimulus
GO:0009644biological_processresponse to high light intensity
GO:0009657biological_processplastid organization and biogenesis
GO:0009658biological_processchloroplast organization and biogenesis
GO:0016117biological_processcarotenoid biosynthesis
GO:0009579cellular_componentthylakoid
GO:0009916molecular_functionalternative oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25587.1.S1_at--108--6291Chr04:33904167..33904191 (25 bp)
GATGTTACTGCAAGTTGTGAAGCCC
LOC_Os04g57320
Os.25587.1.S1_at--363--8791Chr04:33904165..33904189 (25 bp)
TGTTACTGCAAGTTGTGAAGCCCTA
LOC_Os04g57320
Os.25587.1.S1_at--731--6751Chr04:33904164..33904188 (25 bp)
GTTACTGCAAGTTGTGAAGCCCTAC
LOC_Os04g57320
Os.25587.1.S1_at--537--10471Chr04:33904163..33904187 (25 bp)
TTACTGCAAGTTGTGAAGCCCTACA
LOC_Os04g57320
Os.25587.1.S1_at--288--1971Chr04:33904161..33904185 (25 bp)
ACTGCAAGTTGTGAAGCCCTACAAA
LOC_Os04g57320
Os.25587.1.S1_at--300--5171Chr04:33904158..33904182 (25 bp)
GCAAGTTGTGAAGCCCTACAAAATT
LOC_Os04g57320
Os.25587.1.S1_at--798--1231Chr04:33904155..33904179 (25 bp)
AGTTGTGAAGCCCTACAAAATTTGC
LOC_Os04g57320
Os.25587.1.S1_at--750--10791Chr04:33904153..33904177 (25 bp)
TTGTGAAGCCCTACAAAATTTGCAA
LOC_Os04g57320
Os.25587.1.S1_at--651--3271Chr04:33904140..33904164 (25 bp)
CAAAATTTGCAATCTTGATGTGCTG
LOC_Os04g57320
Os.25587.1.S1_at--587--9411Chr04:33903823..33903847 (25 bp)
TCGTCGTTCTCATAATCTTATCTAT
NONE
Os.25587.1.S1_at--795--4011Chr04:33903822..33903846 (25 bp)
CGTCGTTCTCATAATCTTATCTATA
NONE
Target Sequence 
GATGTTACTGCAAGTTGTGAAGCCCTACAAAATTTGCAATCTTGATGTGCTGTGGTTCTATGGAAAGTTCGGTTGCTTGC
TGCTTCTTAAGTTCACAAAGCTGCTCTGTAAGGGAAATGGAGATGGCTCATGATCAGGCAGCATACGGTGAATATGGTCA
GCTCAAGGTGGAACTGACTCAAACCGTAGAATTTCGTGAAGATGAGAAGGAAGCTCNCTGCAGTATCGAAGAAGTCAATG
CGAAATGAAAAATCAATCATACTGCTGCTTTGTTTTTTCTGAAGATTTATTTGTCATTTATTCAGTGTACAGATGATACT
ATTACATCTCAGGCAAATTACTGTATCGTCGTTCTCATAATCTTATCTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25587.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis