Browse Element(s) Details


Os.57028.1.S1_at

Description gb:AK110767.1
DB_XREF= gi:32995976
TID=Os.57028.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57028 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-171-A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-171-A07, full insert sequence.
FL= gb:AK110767.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5738011/11Phospholipase/Carboxylesterase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57320Os.25587.1.S1_s_at10/114+33903833..33906854Immutans protein, putative, expressed
LOC_Os04g57320Os.25587.1.S1_at9/114+33903833..33906854Immutans protein, putative, expressed
LOC_Os04g57320Os.25587.3.S1_x_at6/114+33903833..33906854Immutans protein, putative, expressed
LOC_Os04g57330Os.13987.1.S1_at11/114+33908934..33912073expressed protein
LOC_Os04g57340NANA4+33914656..33915517AP2 domain containing protein, expressed
LOC_Os04g57350Os.18279.1.S1_at11/114+33919168..33923078EH-domain containing protein 1, putative, expressed
LOC_Os04g57360Os.54317.1.S1_at11/114+33923478..33926185expressed protein
LOC_Os04g57360OsAffx.26645.1.S1_at10/114+33923478..33926185expressed protein
LOC_Os04g57370Os.22450.1.S1_at11/114+33929122..33931657Phospholipase/Carboxylesterase family protein, expressed
LOC_Os04g57380Os.57028.1.S1_at11/114+33931853..33933371Phospholipase/Carboxylesterase family protein, expressed
LOC_Os04g57390OsAffx.14457.1.S1_at11/114+33934285..33935850Phospholipase/Carboxylesterase family protein, expressed
LOC_Os04g57400Os.5851.1.S1_at11/114+33936430..339396275-methylthioribose kinase family protein, expressed
LOC_Os04g57410Os.5851.1.S1_at4/114+33942669..339453015-methylthioribose kinase family protein
LOC_Os04g57420Os.48312.1.S1_at11/114+33947430..33950345Reticulon family protein, expressed
LOC_Os04g57420Os.56185.1.S1_at1/114+33947430..33950345Reticulon family protein, expressed
LOC_Os04g57420Os.56185.1.S1_x_at1/114+33947430..33950345Reticulon family protein, expressed
LOC_Os04g57430Os.15377.1.A1_at7/114+33952558..33954118Leucine Rich Repeat family protein, expressed
LOC_Os04g57440Os.8032.1.S1_at11/114+33954276..33957672Cysteine protease 1 precursor, putative, expressed
LOC_Os04g57440Os.8032.1.S2_at11/114+33954276..33957672Cysteine protease 1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57028.1.S1_at--801--5331Chr04:33932706..33932730 (25 bp)
GAAGTAGCTGCTGGGACGAGTCCTT
LOC_Os04g57380
Os.57028.1.S1_at--806--291Chr04:33932562..33932586 (25 bp)
ATAGCAAGTGTTCTACTCTACCCAA
LOC_Os04g57380
Os.57028.1.S1_at--474--9631Chr04:33932513..33932537 (25 bp)
TCAGTGGATCACTTCCTCTAAGCAA
LOC_Os04g57380
Os.57028.1.S1_at--380--3451Chr04:33932344..33932368 (25 bp)
CAGTTTTGTGGTTTCATGGCATGGC
LOC_Os04g57380
Os.57028.1.S1_at--729--8271Chr04:33932264..33932285 (22 bp)
GGCATGCACTGCGAATTCAAGGCTT
LOC_Os04g57380
Os.57028.1.S1_at--988--2931Chr04:33932141..33932164 (24 bp)
AAGGCTTATCCTGCACTTGGGCATA
LOC_Os04g57380
Os.57028.1.S1_at--847--8991Chr04:33932106..33932130 (25 bp)
TGAAGAGCTCCAGTATTTTCGACAA
LOC_Os04g57380
Os.57028.1.S1_at--878--1311Chr04:33932023..33932047 (25 bp)
AGATGGATCTCCAGTAGCTGCTTGT
LOC_Os04g57380
Os.57028.1.S1_at--1130--4991Chr04:33931981..33932005 (25 bp)
GCAGGAATCCTAGGCCCCAATTTTT
LOC_Os04g57380
Os.57028.1.S1_at--273--10371Chr04:33931961..33931985 (25 bp)
TTTTTATAGCTCCTTCTTGTTCTTG
LOC_Os04g57380
Os.57028.1.S1_at--820--6271Chr04:33931874..33931898 (25 bp)
GATGTACTGCGAAATGCCTTTTTAT
LOC_Os04g57380
Target Sequence 
GAAGTAGCTGCTGGGACGAGTCCTTCAAATATATTCGTTTGTGGGTTAAGCCAAGGAGGTGCTCTAGCCATAGCAAGTGT
TCTACTCTACCCAATGACTTTAGGTGGCTGTGTTGTGTTCAGTGGATCACTTCCTCTAAGCAAAACATTTGCTGAGAGTA
TACCATCTGAAGCTAGAAAGACACCAGTTTTGTGGTTTCATGGCATGGCTGACGGGGTGGTACTGTTTGAAGCTGGGCAT
GCTGGGTGTGCATTTTTACAAGAAATTGGCATGCACTGCGAATTCAAGGCTTATCCTGCACTTGGGCATACATTGGTGGA
TGAAGAGCTCCAGTATTTTCGACAATGGATCAAGGATCGTTTATCTCAAGGAACTGGAGTTCCAGTGCCATCCTTATCTG
ACAAGATGGATCTCCAGTAGCTGCTTGTTTTTTTAGAACCAAAGGGCAGGAATCCTAGGCCCCAATTTTTATAGCTCCTT
CTTGTTCTTGATGTGGATATTCTAGTCCAATTTATGGCTACCATTCATTGTTGGTACATTGGTGCTACATTTGATGTACT
GCGAAATGCCTTTTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57028.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis