Browse Element(s) Details


Os.8032.1.S1_at

Description gb:AK107749.1
DB_XREF= gi:32992958
TID=Os.8032.1
CNT=81
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8032 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for oryzain beta, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-132-H07, full insert sequence.
FL= gb:AK099358.1 gb:D90407.1 gb:AK109371.2 gb:AK073373.1 gb:AK107749.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5744011/11Cysteine protease 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57370Os.22450.1.S1_at11/114+33929122..33931657Phospholipase/Carboxylesterase family protein, expressed
LOC_Os04g57380Os.57028.1.S1_at11/114+33931853..33933371Phospholipase/Carboxylesterase family protein, expressed
LOC_Os04g57390OsAffx.14457.1.S1_at11/114+33934285..33935850Phospholipase/Carboxylesterase family protein, expressed
LOC_Os04g57400Os.5851.1.S1_at11/114+33936430..339396275-methylthioribose kinase family protein, expressed
LOC_Os04g57410Os.5851.1.S1_at4/114+33942669..339453015-methylthioribose kinase family protein
LOC_Os04g57420Os.48312.1.S1_at11/114+33947430..33950345Reticulon family protein, expressed
LOC_Os04g57420Os.56185.1.S1_at1/114+33947430..33950345Reticulon family protein, expressed
LOC_Os04g57420Os.56185.1.S1_x_at1/114+33947430..33950345Reticulon family protein, expressed
LOC_Os04g57430Os.15377.1.A1_at7/114+33952558..33954118Leucine Rich Repeat family protein, expressed
LOC_Os04g57440Os.8032.1.S1_at11/114+33954276..33957672Cysteine protease 1 precursor, putative, expressed
LOC_Os04g57440Os.8032.1.S2_at11/114+33954276..33957672Cysteine protease 1 precursor, putative, expressed
LOC_Os04g57450NANA4+33959729..33963324retrotransposon protein, putative, unclassified
LOC_Os04g57460NANA4+33963645..33969798retrotransposon protein, putative, unclassified
LOC_Os04g57470Os.40360.1.S1_x_at1/114+33975806..33976564hypothetical protein
LOC_Os04g57480Os.51843.1.S1_x_at11/114+33981997..33986622OTU-like cysteine protease family protein, expressed
LOC_Os04g57480Os.51843.1.S1_at11/114+33981997..33986622OTU-like cysteine protease family protein, expressed
LOC_Os04g57480Os.51843.2.S1_at1/114+33981997..33986622OTU-like cysteine protease family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009414biological_processresponse to water deprivation
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8032.1.S1_at--323--4491Chr04:33957479..33957503 (25 bp)
GCCGGACATGTCGATCATCTCCTAC
LOC_Os04g57440
Os.8032.1.S1_at--18--9131Chr04:33955923..33955947 (25 bp)
TGCTGGGCCTTCTCCGCAGTAAGCA
LOC_Os04g57440
Os.8032.1.S1_at--692--4311Chr04:33955916..33955940 (25 bp)
CCTTCTCCGCAGTAAGCACAGTAGA
LOC_Os04g57440
Os.8032.1.S1_at--659--1491Chr04:33955902..33955926 (25 bp)
AGCACAGTAGAAAGCATCAACCAAC
LOC_Os04g57440
Os.8032.1.S1_at--1003--5551Chr04:33955893..33955917 (25 bp)
GAAAGCATCAACCAACTTGTTACTG
LOC_Os04g57440
Os.8032.1.S1_at--302--3271Chr04:33955881..33955905 (25 bp)
CAACTTGTTACTGGTGAGATGATCA
LOC_Os04g57440
Os.8032.1.S1_at--617--6031Chr04:33955866..33955890 (25 bp)
GAGATGATCACATTGTCGGAACAAG
LOC_Os04g57440
Os.8032.1.S1_at--714--3311Chr04:33955858..33955882 (25 bp)
CACATTGTCGGAACAAGAACTTGTA
LOC_Os04g57440
Os.8032.1.S1_at--182--1431Chr04:33955843..33955867 (25 bp)
AGAACTTGTAGAATGCTCAACCAAT
LOC_Os04g57440
Os.8032.1.S1_at--398--6951Chr04:33955836..33955860 (25 bp)
GTAGAATGCTCAACCAATGGACAGA
LOC_Os04g57440
Os.8032.1.S1_at--561--2631Chr04:33955825..33955849 (25 bp)
AACCAATGGACAGAACAGTGGCTGC
LOC_Os04g57440
Target Sequence 
GCCGGACATGTCGATCATCTCCTACAACGCGGAGCACGGGGCGCGGGGGCTGGAGGAGGGGCCCACGGAGGCCGAGGCGC
GCGCCGCGTACGACCTCTGGCTCGCCGAGAACGGCGGCGGCTCGCCCAACGCGCTCGGCGGCGAGCACGAGCGCCGGTTC
CTCGTGTTCTGGGACAACCTCAAGTTCGTCGACGCCCACAACGCCCGCGCCGACGAGCGCGGCGGGTTCCGCCTCGGGNA
TGAACCGCTTCGCCGATCTCACCAACGAGGAGTTCCGCGCGACCTTCCTCGGCGCCAAGGTCGCCGAGAGGAGCCGCGCC
GCCGGGGAGAGGTACCGCCACGACGGGGTGGAGGAGCTGCCGGAGTCCGTCGACTGGAGGGAGAAGGGCGCCGTCGCCCC
CGTCAAGAACCAGGGCCAATGCGGAAGCTGCTGGGCCTTCTCCGCAGTAAGCACAGTAGAAAGCATCAACCAACTTGTTA
CTGGTGAGATGATCACATTGTCGGAACAAGAACTTGTAGAATGCTCAACCAATGGACAGAACAGTGGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8032.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis