Browse Element(s) Details


Os.51843.1.S1_x_at

Description gb:AK064003.1
DB_XREF= gi:32974021
TID=Os.51843.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51843 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033118N06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-124-G01, full insert sequence.
FL= gb:AK064003.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5748011/11OTU-like cysteine protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57440Os.8032.1.S1_at11/114+33954276..33957672Cysteine protease 1 precursor, putative, expressed
LOC_Os04g57440Os.8032.1.S2_at11/114+33954276..33957672Cysteine protease 1 precursor, putative, expressed
LOC_Os04g57450NANA4+33959729..33963324retrotransposon protein, putative, unclassified
LOC_Os04g57460NANA4+33963645..33969798retrotransposon protein, putative, unclassified
LOC_Os04g57470Os.40360.1.S1_x_at1/114+33975806..33976564hypothetical protein
LOC_Os04g57480Os.51843.1.S1_x_at11/114+33981997..33986622OTU-like cysteine protease family protein, expressed
LOC_Os04g57480Os.51843.1.S1_at11/114+33981997..33986622OTU-like cysteine protease family protein, expressed
LOC_Os04g57480Os.51843.2.S1_at1/114+33981997..33986622OTU-like cysteine protease family protein, expressed
LOC_Os04g57490Os.55109.1.S1_at11/114+33986934..33988846Cysteine protease 1 precursor, putative, expressed
LOC_Os04g57510Os.11868.3.S1_x_at11/114+33990592..33995732Exostosin family protein, expressed
LOC_Os04g57510Os.11868.2.S1_at11/114+33990592..33995732Exostosin family protein, expressed
LOC_Os04g57510OsAffx.988.1.S1_at1/114+33990592..33995732Exostosin family protein, expressed
LOC_Os04g57500Os.11868.1.A1_at11/114+33991088..33992032phosphatidate cytidylyltransferase family protein, putative, expressed
LOC_Os04g57520Os.49659.1.S1_at11/114+33996762..34003309expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51843.1.S1_x_at--523--6671Chr04:33982500..33982524 (25 bp)
GTTGCACCAGATCTAGGAGCTCTTT
LOC_Os04g57480
Os.51843.1.S1_x_at--81--8611Chr04:33982464..33982488 (25 bp)
TGGTCGACGAGGGTGATGTTCTCCT
LOC_Os04g57480
Os.51843.1.S1_x_at--887--731Chr04:33982449..33982473 (25 bp)
ATGTTCTCCTCAGTGTGTAGCCGCC
LOC_Os04g57480
Os.51843.1.S1_x_at--1049--2771Chr04:33982399..33982423 (25 bp)
AAGAGAGATGTCTGCGGTCTACCTT
LOC_Os04g57480
Os.51843.1.S1_x_at--1042--9971Chr04:33982380..33982404 (25 bp)
TACCTTGCTTGGACGCCATGATCTA
LOC_Os04g57480
Os.51843.1.S1_x_at--763--1311Chr04:33982356..33982380 (25 bp)
AGATGGTGATTTTTCTCTTGCCCAG
LOC_Os04g57480
Os.51843.1.S1_x_at--780--4311Chr04:33982311..33982335 (25 bp)
CCTTCTGCTGACTGACTGTTGTTAA
LOC_Os04g57480
Os.51843.1.S1_x_at--545--5711Chr04:33982298..33982322 (25 bp)
GACTGTTGTTAAGCCTGTCCAAGTT
LOC_Os04g57480
Os.51843.1.S1_x_at--855--6471Chr04:33982203..33982227 (25 bp)
GATACATAGCTTCTTTTCTTCATAC
LOC_Os04g57480
Os.51843.1.S1_x_at--1101--271Chr04:33982097..33982121 (25 bp)
ATAGAGTATTCCCTGTCCTAACAAA
LOC_Os04g57480
Os.51843.1.S1_x_at--127--6891Chr04:33982015..33982039 (25 bp)
GTATATATAGCCAGTCAGTCACAAT
LOC_Os04g57480
Target Sequence 
GTTGCACCAGATCTAGGAGCTCTTTGCATATGAACATGGTCGACGAGGGTGATGTTCTCCTCAGTGTGTAGCCGCCAGGA
ATGTGCGGGGCATCAGTTTTGAAGAGAGATGTCTGCGGTCTACCTTGCTTGGACGCCATGATCTAGATGGTGATTTTTCT
CTTGCCCAGTTGACGGCTTCACGTCACTGCCTTCTGCTGACTGACTGTTGTTAAGCCTGTCCAAGTTTCAGGATGGGATC
ATGGGACTGACGGTGAGGTGGTGATCTCAGTGGGCACAGAAACATGAATGAGCTGTTGATACATAGCTTCTTTTCTTCAT
ACATACTTTACCTGTGGATCAATGCCATGTAAAACAATGATCAGTCGTGCAAAGCATATTAATTTTGTGAGAATTATATC
ATAATAGAGTATTCCCTGTCCTAACAAAACAAAAATACGCTCTATTGTTTGAGATGGAGGGATAGTATAATGGGTTCATC
CTGGAGTATATATAGCCAGTCAGTCACAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51843.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis