Browse Element(s) Details


Os.55109.1.S1_at

Description gb:AK107506.1
DB_XREF= gi:32992715
TID=Os.55109.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55109 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-E06, full insert sequence.
FL= gb:AK107506.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5749011/11Cysteine protease 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57450NANA4+33959729..33963324retrotransposon protein, putative, unclassified
LOC_Os04g57460NANA4+33963645..33969798retrotransposon protein, putative, unclassified
LOC_Os04g57470Os.40360.1.S1_x_at1/114+33975806..33976564hypothetical protein
LOC_Os04g57480Os.51843.1.S1_x_at11/114+33981997..33986622OTU-like cysteine protease family protein, expressed
LOC_Os04g57480Os.51843.1.S1_at11/114+33981997..33986622OTU-like cysteine protease family protein, expressed
LOC_Os04g57480Os.51843.2.S1_at1/114+33981997..33986622OTU-like cysteine protease family protein, expressed
LOC_Os04g57490Os.55109.1.S1_at11/114+33986934..33988846Cysteine protease 1 precursor, putative, expressed
LOC_Os04g57510Os.11868.3.S1_x_at11/114+33990592..33995732Exostosin family protein, expressed
LOC_Os04g57510Os.11868.2.S1_at11/114+33990592..33995732Exostosin family protein, expressed
LOC_Os04g57510OsAffx.988.1.S1_at1/114+33990592..33995732Exostosin family protein, expressed
LOC_Os04g57500Os.11868.1.A1_at11/114+33991088..33992032phosphatidate cytidylyltransferase family protein, putative, expressed
LOC_Os04g57520Os.49659.1.S1_at11/114+33996762..34003309expressed protein
LOC_Os04g57530NANA4+34012126..34014305expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009414biological_processresponse to water deprivation
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55109.1.S1_at--200--6231Chr04:33988148..33988172 (25 bp)
GATGGCGTCCTACCCGATCAAGAAG
LOC_Os04g57490
Os.55109.1.S1_at--651--3011Chr04:33988225..33988249 (25 bp)
AATGCGACCGGTACAGCAAGTGCCC
LOC_Os04g57490
Os.55109.1.S1_at--792--9111Chr04:33988263..33988287 (25 bp)
TGCTGCTGCAACTACGGGATCAGGA
LOC_Os04g57490
Os.55109.1.S1_at--154--7671Chr04:33988278..33988302 (25 bp)
GGGATCAGGAACCACTGCATCGTGT
LOC_Os04g57490
Os.55109.1.S1_at--1096--2911Chr04:33988362..33988386 (25 bp)
AAGGAGTATCCCGTCTGCAACGCCA
LOC_Os04g57490
Os.55109.1.S1_at--113--2951Chr04:33988386..33988406 (21 bp)
AAGGCTCGCACTTGCTCCAAGAGCA
LOC_Os04g57490
Os.55109.1.S1_at--1051--7031Chr04:33988614..33988638 (25 bp)
GTACAATATCAGGACTCCGGCGGCG
LOC_Os04g57490
Os.55109.1.S1_at--987--6231Chr04:33988638..33988662 (25 bp)
GATGGCACGAAGTGTTCCGGAACAA
LOC_Os04g57490
Os.55109.1.S1_at--73--5431Chr04:33988710..33988734 (25 bp)
GAAGCCTTATCTTTGTTACTGTTAC
LOC_Os04g57490
Os.55109.1.S1_at--733--10771Chr04:33988722..33988746 (25 bp)
TTGTTACTGTTACCGAGTCCTTTAT
LOC_Os04g57490
Os.55109.1.S1_at--214--7271Chr04:33988738..33988762 (25 bp)
GTCCTTTATTATTATCGCTCTTTTT
LOC_Os04g57490
Target Sequence 
GATGGCGTCCTACCCGATCAAGAAGGGGCCCAACCCGAAGCCGTCGCCGCCGTCTCCGGCGCCATCGCCGCCGCAGCAAT
GCGACCGGTACAGCAAGTGCCCGGCGGGGACCACCTGCTGCTGCAACTACGGGATCAGGAACCACTGCATCGTGTGGGGA
TGCTGCCCCGTCGAGGGCGCCACCTGCTGCAAGGATCACTCCACCTGCTGCCCCAAGGAGTATCCCGTCTGCAACGCCAA
GGCTCGCACTTGCTCCAAGAGCAAGAACAGCCCGTACAATATCAGGACTCCGGCGGCGATGGCACGAAGTGTTCCGGAAC
AACCTGATTCAATCTCTTTTGTAGTTTTGAATAGGGAAGATCTAGTATAGAAGCCTTATCTTTGTTACTGTTACCGAGTC
CTTTATTATTATCGCTCTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55109.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis