Browse Element(s) Details


Os.11868.3.S1_x_at

Description gb:AK064255.1
DB_XREF= gi:32974273
TID=Os.11868.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11868 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013046L12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-105-C09, full insert sequence.
FL= gb:AK064255.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5751011/11Exostosin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57460NANA4+33963645..33969798retrotransposon protein, putative, unclassified
LOC_Os04g57470Os.40360.1.S1_x_at1/114+33975806..33976564hypothetical protein
LOC_Os04g57480Os.51843.1.S1_x_at11/114+33981997..33986622OTU-like cysteine protease family protein, expressed
LOC_Os04g57480Os.51843.1.S1_at11/114+33981997..33986622OTU-like cysteine protease family protein, expressed
LOC_Os04g57480Os.51843.2.S1_at1/114+33981997..33986622OTU-like cysteine protease family protein, expressed
LOC_Os04g57490Os.55109.1.S1_at11/114+33986934..33988846Cysteine protease 1 precursor, putative, expressed
LOC_Os04g57510Os.11868.3.S1_x_at11/114+33990592..33995732Exostosin family protein, expressed
LOC_Os04g57510Os.11868.2.S1_at11/114+33990592..33995732Exostosin family protein, expressed
LOC_Os04g57510OsAffx.988.1.S1_at1/114+33990592..33995732Exostosin family protein, expressed
LOC_Os04g57500Os.11868.1.A1_at11/114+33991088..33992032phosphatidate cytidylyltransferase family protein, putative, expressed
LOC_Os04g57520Os.49659.1.S1_at11/114+33996762..34003309expressed protein
LOC_Os04g57530NANA4+34012126..34014305expressed protein
LOC_Os04g57540Os.17130.1.S1_at11/114+34017343..34019799Adenylate kinase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11868.3.S1_x_at--157--2531Chr04:33992753..33992777 (25 bp)
AACTTCATGTCGTCTCTTTGATGCT
LOC_Os04g57510
Os.11868.3.S1_x_at--581--1151Chr04:33992722..33992746 (25 bp)
AGTCTGTGCATACCTGTCATTGTCA
LOC_Os04g57510
Os.11868.3.S1_x_at--611--5211Chr04:33992653..33992677 (25 bp)
GAATTCGCCATTTTTGTCTCAGTCA
LOC_Os04g57510
Os.11868.3.S1_x_at--772--2751Chr04:33992591..33992615 (25 bp)
AAGAAATGTCCCCAGGCAGCAGAAA
LOC_Os04g57510
Os.11868.3.S1_x_at--422--10091Chr04:33992501..33992525 (25 bp)
TAGGATGGCCTCTGCTGCACAAGAT
LOC_Os04g57510
Os.11868.3.S1_x_at--954--8871Chr04:33992393..33992417 (25 bp)
TGATGGAACATCGATCCCTCTTCGG
LOC_Os04g57510
Os.11868.3.S1_x_at--131--7791Chr04:33992370..33992394 (25 bp)
GGTGCCATTGTACATGACTCGCGAG
LOC_Os04g57510
Os.11868.3.S1_x_at--506--8011Chr04:33992307..33992331 (25 bp)
GGAGTTAGTTAGCATTCCCTGCCAA
LOC_Os04g57510
Os.11868.3.S1_x_at--177--1191Chr04:33992240..33992264 (25 bp)
AGTAGGTTTATGCTCTTGTTGTCAA
LOC_Os04g57510
Os.11868.3.S1_x_at--717--191Chr04:33992211..33992235 (25 bp)
ATTTCGTCTGGAGTGATTCCCCGCA
LOC_Os04g57510
Os.11868.3.S1_x_at--766--4211Chr04:33992191..33992215 (25 bp)
CCGCATTGCTCCATGTGTGAGGTTT
LOC_Os04g57510
Target Sequence 
AACTTCATGTCGTCTCTTTGATGCTGTTGCTAGTCTGTGCATACCTGTCATTGTCAGCGATGAGATTGAGCTGCCCTTTG
AAGGGATGATAGATTACACAGAATTCGCCATTTTTGTCTCAGTCAATAATTCTATGAGACCAAAATGGCTCACAAACTAC
TTAAGAAATGTCCCCAGGCAGCAGAAAGATGAATTCCGAAGAAACATGGCTCACGTCCAGCCTATATTTGAGTATGATAG
TATTTACCCAGGTAGGATGGCCTCTGCTGCACAAGATGGTGCTGTGAACCACATCTGGAAAAAGATTCACCAGAAGTTGC
CGATGATTCAAGAAGCGGTTACCCGAGAGAAGCGAAAACCTGATGGAACATCGATCCCTCTTCGGTGCCATTGTACATGA
CTCGCGAGACATGATTGTTAGTATTAGCAATCAATCCCCCATGGGAGGAGTTAGTTAGCATTCCCTGCCAATTTATGGAT
TGTTTGTAGTGCAAATATGAGAGAAATTTCAACAGTAGGTTTATGCTCTTGTTGTCAATTGTATTTCGTCTGGAGTGATT
CCCCGCATTGCTCCATGTGTGAGGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11868.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis