Browse Element(s) Details


Os.49659.1.S1_at

Description gb:AK073170.1
DB_XREF= gi:32983193
TID=Os.49659.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49659 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033023O17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033023O17, full insert sequence.
FL= gb:AK072097.1 gb:AK073170.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5752011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57470Os.40360.1.S1_x_at1/114+33975806..33976564hypothetical protein
LOC_Os04g57480Os.51843.1.S1_x_at11/114+33981997..33986622OTU-like cysteine protease family protein, expressed
LOC_Os04g57480Os.51843.1.S1_at11/114+33981997..33986622OTU-like cysteine protease family protein, expressed
LOC_Os04g57480Os.51843.2.S1_at1/114+33981997..33986622OTU-like cysteine protease family protein, expressed
LOC_Os04g57490Os.55109.1.S1_at11/114+33986934..33988846Cysteine protease 1 precursor, putative, expressed
LOC_Os04g57510Os.11868.3.S1_x_at11/114+33990592..33995732Exostosin family protein, expressed
LOC_Os04g57510Os.11868.2.S1_at11/114+33990592..33995732Exostosin family protein, expressed
LOC_Os04g57510OsAffx.988.1.S1_at1/114+33990592..33995732Exostosin family protein, expressed
LOC_Os04g57500Os.11868.1.A1_at11/114+33991088..33992032phosphatidate cytidylyltransferase family protein, putative, expressed
LOC_Os04g57520Os.49659.1.S1_at11/114+33996762..34003309expressed protein
LOC_Os04g57530NANA4+34012126..34014305expressed protein
LOC_Os04g57540Os.17130.1.S1_at11/114+34017343..34019799Adenylate kinase, chloroplast precursor, putative, expressed
LOC_Os04g57550Os.11407.1.S1_at11/114+34020761..34024119amine oxidase, flavin-containing family protein, expressed
LOC_Os04g57560Os.10617.1.S1_at11/114+34025190..34029263amine oxidase, flavin-containing family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.49659.1.S1_at--13--3011Chr04:34002632..34002656 (25 bp)
AATGAGCCTAGCCTGAGTGCTAAGC
LOC_Os04g57520
Os.49659.1.S1_at--486--1131Chr04:34002647..34002671 (25 bp)
AGTGCTAAGCTGAACTATCCTCCTC
LOC_Os04g57520
Os.49659.1.S1_at--334--1351Chr04:34002710..34002734 (25 bp)
AGAGTTGCAATTCGCCTACCTGATG
LOC_Os04g57520
Os.49659.1.S1_at--194--211Chr04:34002753..34002777 (25 bp)
ATTTCCTTCACACGGATCCTATTAA
LOC_Os04g57520
Os.49659.1.S1_at--940--6351Chr04:34002767..34002871 (25 bp)
GATCCTATTAAGCTCCTGTGGTCAT
LOC_Os04g57520
Os.49659.1.S1_at--973--8591Chr04:34002865..34002889 (25 bp)
TGGTCATTCTGCTATCCTCAAGTGG
LOC_Os04g57520
Os.49659.1.S1_at--901--2731Chr04:34002901..34002925 (25 bp)
AAGAAGGCTTTCCATTTCGTACAGC
LOC_Os04g57520
Os.49659.1.S1_at--645--51Chr04:34002928..34002952 (25 bp)
ATTCCTAGGGCATCCACAAACCTGG
LOC_Os04g57520
Os.49659.1.S1_at--991--3491Chr04:34003042..34003066 (25 bp)
CATGTTATTTCTTTATTGGCTCCAA
LOC_Os04g57520
Os.49659.1.S1_at--180--1851Chr04:34003153..34003177 (25 bp)
ACGAATCTGGTTTCTTTGGTGTGGA
LOC_Os04g57520
Os.49659.1.S1_at--147--5591Chr04:34003176..34003200 (25 bp)
GAAATGCCCATATTCCTTTTGTAGT
LOC_Os04g57520
Target Sequence
AATGAGCCTAGCCTGAGTGCTAAGCTGAACTATCCTCCTCTCCCTGAAGAACCCAAAGGAAGTCGGGAGCTTTTGTGCAG
AGTTGCAATTCGCCTACCTGATGGTAGGNAGGATCCAGAGGAATTTCCTTCACACGGATCCTATTAAGCTCCTGTGGTCA
TTCTGCTATCCTCAAGTGGNGGACGGGGATAAGAAGGCTTTCCATTTCGTACAGCCCATTCCTAGGGCATCCACAAACCT
GGAGTACGAGAGTGATAAAACTTTCAAAGAAGCCGGGTTGGCCNACTCGATGATCAACCTTTTGTGGGACTAAAAGCCTA
TTTTATCAACTCATGTTATTTCTTTATTGGCTCCAAGTCAAGATTATCGAGTGATTTTCTGTGAGGGTTCATAATTGCTT
CTCTTANTTTTCTTTTTCCCTCCTGGTGCTTGGAGCCAAATGACGAATCTGGTTTCTTTGGTGTGGAAATGCCCATATTC
CTTTTGTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49659.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis