Browse Element(s) Details


Os.10617.1.S1_at

Description gb:AK072414.1
DB_XREF= gi:32982437
TID=Os.10617.1
CNT=39
FEA=FLmRNA
TIER=FL+Stack
STK=12
UG=Os.10617 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023083K01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023083K01, full insert sequence.
FL= gb:AK072414.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5756011/11amine oxidase, flavin-containing family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57520Os.49659.1.S1_at11/114+33996762..34003309expressed protein
LOC_Os04g57530NANA4+34012126..34014305expressed protein
LOC_Os04g57540Os.17130.1.S1_at11/114+34017343..34019799Adenylate kinase, chloroplast precursor, putative, expressed
LOC_Os04g57550Os.11407.1.S1_at11/114+34020761..34024119amine oxidase, flavin-containing family protein, expressed
LOC_Os04g57560Os.10617.1.S1_at11/114+34025190..34029263amine oxidase, flavin-containing family protein, expressed
LOC_Os04g57570Os.28346.5.S1_at11/114+34033348..34044339retrotransposon protein, putative, unclassified
LOC_Os04g57570Os.28346.5.S1_x_at10/114+34033348..34044339retrotransposon protein, putative, unclassified
LOC_Os04g57570Os.28346.3.S1_x_at10/114+34033348..34044339retrotransposon protein, putative, unclassified
LOC_Os04g57570Os.28346.4.S1_x_at8/114+34033348..34044339retrotransposon protein, putative, unclassified
LOC_Os04g57570Os.28346.1.S1_x_at5/114+34033348..34044339retrotransposon protein, putative, unclassified
LOC_Os04g57570Os.28346.1.S1_at1/114+34033348..34044339retrotransposon protein, putative, unclassified
LOC_Os04g57580Os.28346.5.S1_at11/114+34045035..34046566retrotransposon protein, putative, unclassified
LOC_Os04g57580Os.28346.5.S1_x_at10/114+34045035..34046566retrotransposon protein, putative, unclassified
LOC_Os04g57580Os.28346.4.S1_x_at9/114+34045035..34046566retrotransposon protein, putative, unclassified
LOC_Os04g57590Os.9269.1.S1_at11/114+34048840..34051785intracellular protease, PfpI family protein, expressed
LOC_Os04g57600Os.12216.1.S1_at11/114+34053596..34057602Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0008131molecular_functionamine oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10617.1.S1_at--190--7051Chr04:34025846..34025870 (25 bp)
GTAAACTTTGTCATGTCTCAGCTCA
LOC_Os04g57560
Os.10617.1.S1_at--481--5811Chr04:34025664..34025688 (25 bp)
GACCCGAATTCGCTTGGTTCTTATT
LOC_Os04g57560
Os.10617.1.S1_at--765--10211Chr04:34025643..34025667 (25 bp)
TATTCCTGCGACCTTGTTGGGAAGC
LOC_Os04g57560
Os.10617.1.S1_at--629--2331Chr04:34025603..34025627 (25 bp)
AAAGATTCTGTGCTCCGGTGGGCAA
LOC_Os04g57560
Os.10617.1.S1_at--109--6451Chr04:34025547..34025571 (25 bp)
GATCACTCTGGGTCCGTGCATGGAG
LOC_Os04g57560
Os.10617.1.S1_at--786--4991Chr04:34025530..34025554 (25 bp)
GCATGGAGCTTATTCTTCAGGCATT
LOC_Os04g57560
Os.10617.1.S1_at--940--71Chr04:34025492..34025516 (25 bp)
ATTGCCGAAGGCATCTGTCGACGCA
LOC_Os04g57560
Os.10617.1.S1_at--78--2371Chr04:34025364..34025388 (25 bp)
AAAGCCTGCCTATTTAGCACCGTGT
LOC_Os04g57560
Os.10617.1.S1_at--1088--6811Chr04:34025341..34025365 (25 bp)
GTTTATCCTGCAGCTGCTATGGTTA
LOC_Os04g57560
Os.10617.1.S1_at--564--9111Chr04:34025306..34025330 (25 bp)
TGCTGCTCTGTAGTTTCCTAATTAT
LOC_Os04g57560
Os.10617.1.S1_at--1152--10391Chr04:34025285..34025309 (25 bp)
TTATCTCAGATCCTGTACCGTTTCA
LOC_Os04g57560
Target Sequence 
GTAAACTTTGTCATGTCTCAGCTCAAGAAAATGCTNACCAGGAGCTACTGAACCGGTCCAGTATTTGGTTTNCAAGGTGG
GGAACCGACCCGAATTCGCTTGGTTCTTATTCCTGCGACCTTGTTGGGAAGCCNAGCTGACTTGTATGAAAGATTCTGTG
CTCCGGTGGGCAACCTGTTTTTCGCTGGGGAGGCCGCCTGCATCGATCACTCTGGGTCCGTGCATGGAGCTTATTCTTCA
GGCATTGTTGCTGCAGAGGATTGCCGAAGGCATCTGTCGACGCAGCTAGGCATCTCCGACCTTTTCCAGGTTGGGAAGAT
TATCATGAGGGAGGAGATGACTGAAGTCATGGTCCCCTTCCAGATATCCAGGCTGTGAAAGAAGAACAAAGCCTGCCTAT
TTAGCACCGTGTTTATCCTGCAGCTGCTATGGTTAATATTGTAGCTGCTGCTCTGTAGTTTCCTAATTATCTCAGATCCT
GTACCGTTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10617.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis