Browse Element(s) Details


Os.9269.1.S1_at

Description gb:AK100753.1
DB_XREF= gi:32985962
TID=Os.9269.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9269 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023118M23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023118M23, full insert sequence.
FL= gb:AK100753.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5759011/11intracellular protease, PfpI family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57550Os.11407.1.S1_at11/114+34020761..34024119amine oxidase, flavin-containing family protein, expressed
LOC_Os04g57560Os.10617.1.S1_at11/114+34025190..34029263amine oxidase, flavin-containing family protein, expressed
LOC_Os04g57570Os.28346.5.S1_at11/114+34033348..34044339retrotransposon protein, putative, unclassified
LOC_Os04g57570Os.28346.5.S1_x_at10/114+34033348..34044339retrotransposon protein, putative, unclassified
LOC_Os04g57570Os.28346.3.S1_x_at10/114+34033348..34044339retrotransposon protein, putative, unclassified
LOC_Os04g57570Os.28346.4.S1_x_at8/114+34033348..34044339retrotransposon protein, putative, unclassified
LOC_Os04g57570Os.28346.1.S1_x_at5/114+34033348..34044339retrotransposon protein, putative, unclassified
LOC_Os04g57570Os.28346.1.S1_at1/114+34033348..34044339retrotransposon protein, putative, unclassified
LOC_Os04g57580Os.28346.5.S1_at11/114+34045035..34046566retrotransposon protein, putative, unclassified
LOC_Os04g57580Os.28346.5.S1_x_at10/114+34045035..34046566retrotransposon protein, putative, unclassified
LOC_Os04g57580Os.28346.4.S1_x_at9/114+34045035..34046566retrotransposon protein, putative, unclassified
LOC_Os04g57590Os.9269.1.S1_at11/114+34048840..34051785intracellular protease, PfpI family protein, expressed
LOC_Os04g57600Os.12216.1.S1_at11/114+34053596..34057602Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os04g57610Os.7177.2.S1_a_at10/114+34059415..34066783Auxin response factor 8, putative, expressed
LOC_Os04g57620OsAffx.26646.1.S1_at9/114+34073548..34077199hypothetical protein
LOC_Os04g57620OsAffx.21938.1.S1_at1/114+34073548..34077199hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9269.1.S1_at--521--2651Chr04:34049869..34049893 (25 bp)
AAGCCTGGTCACGATTTTGCTTTGA
LOC_Os04g57590
Os.9269.1.S1_at--578--9271Chr04:34049780..34049804 (25 bp)
TCCTGAGTACCTTGCACTGAACGAT
LOC_Os04g57590
Os.9269.1.S1_at--1142--9811Chr04:34049723..34049747 (25 bp)
TAAAGCAAAGCCAGTCGCCTCAATT
LOC_Os04g57590
Os.9269.1.S1_at--86--1271Chr04:34049685..34049709 (25 bp)
AGATTTTATCTGCTGCTGGAGTCCT
LOC_Os04g57590
Os.9269.1.S1_at--1077--2271Chr04:34049195..34049219 (25 bp)
AAATGCACGGCGTATCCTGCGGTGA
LOC_Os04g57590
Os.9269.1.S1_at--949--1571Chr04:34049050..34049074 (25 bp)
AGCTCATGGCATTGCTTGGCATCAA
LOC_Os04g57590
Os.9269.1.S1_at--336--10851Chr04:34049035..34049059 (25 bp)
TTGGCATCAAGGTCTCCTTCTGAAG
LOC_Os04g57590
Os.9269.1.S1_at--305--1031Chr04:34049003..34049027 (25 bp)
AGGTCAGGTCCCAGCGTTTTTGCAC
LOC_Os04g57590
Os.9269.1.S1_at--765--2151Chr04:34048963..34048987 (25 bp)
ACAGCTTTGGGCTTTCGTCTAAGAT
LOC_Os04g57590
Os.9269.1.S1_at--1133--1151Chr04:34048932..34048956 (25 bp)
AGTCTTACCGATACTGTACCAGTCT
LOC_Os04g57590
Os.9269.1.S1_at--460--9491Chr04:34048910..34048934 (25 bp)
TCTGCTGTCGTTTTTTGTGCTTGAA
LOC_Os04g57590
Target Sequence 
AAGCCTGGTCACGATTTTGCTTTGACAGCATCATTTGACAATGTGGATGCATCAAGCTATGATGCACTTGTAATTCCTGG
TGGACGGGCTCCTGAGTACCTTGCACTGAACGATAAAGTCATTAGCCTTGTGAAGGGCTTCATGGATAAAGCAAAGCCAG
TCGCCTCAATTTGCCATGGCCAACAGATTTTATCTGCTGCTGGAGTCCTTCAGGGAAGGAAATGCACGGCGTATCCTGCG
GTGAAGCTGAACGTGGTGCTTGGCGGGGCGACATGGCTGGAGCCCAATCCCATTGACCGCTGCTTCACCGACGGCAACCT
TGTGACCGGCGCGGCATGGCCTGGCCACCCGGAGTTCATCTCCCAGCTCATGGCATTGCTTGGCATCAAGGTCTCCTTCT
GAAGCAACGAGAGGTCAGGTCCCAGCGTTTTTGCACGCGATATAGCAAGACACAGCTTTGGGCTTTCGTCTAAGATATAT
ACAGTCTTACCGATACTGTACCAGTCTGCTGTCGTTTTTTGTGCTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9269.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis