Browse Element(s) Details


OsAffx.21938.1.S1_at

Description gb:NM_189317.1
DB_XREF= gi:34905717
GEN=OSJNBb0022N24.17
TID=OsAffx.21938.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0022N24.17 (OSJNBb0022N24.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g576201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57590Os.9269.1.S1_at11/114+34048840..34051785intracellular protease, PfpI family protein, expressed
LOC_Os04g57600Os.12216.1.S1_at11/114+34053596..34057602Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os04g57610Os.7177.2.S1_a_at10/114+34059415..34066783Auxin response factor 8, putative, expressed
LOC_Os04g57620OsAffx.26646.1.S1_at9/114+34073548..34077199hypothetical protein
LOC_Os04g57620OsAffx.21938.1.S1_at1/114+34073548..34077199hypothetical protein
LOC_Os04g57630Os.49680.1.S1_at11/114+34079714..34083512Leucine Rich Repeat family protein, expressed
LOC_Os04g57640Os.53757.1.S1_at11/114+34095289..34101017Poly polymerase catalytic domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21938.1.S1_at--327--6991Chr01:11471940..11471964 (25 bp)
GTACGGCACCGCGATAGTCTTGGAC
NONE
OsAffx.21938.1.S1_at--570--7131Chr01:11471956..11471980 (25 bp)
GTCTTGGACCCACTTGATTATCATC
NONE
OsAffx.21938.1.S1_at--30--9091NONE
TGCTAGGATATACGTGTGCTCGCCC
NONE
OsAffx.21938.1.S1_at--66--2291Chr01:11473630..11473654 (25 bp)
AAATGATCTTCTCAGACGGACCGGC
NONE
OsAffx.21938.1.S1_at--731--1771Chr01:11473649..11473673 (25 bp)
ACCGGCCATCCACCTGTGAAAATTG
NONE
OsAffx.21938.1.S1_at--651--3171Chr01:11473669..11473693 (25 bp)
AATTGGCGATATTCGCACGCCTTTG
NONE
OsAffx.21938.1.S1_at--808--10691NONE
TTGCCTACAGCTCTTTGTCGGGAAA
NONE
OsAffx.21938.1.S1_at--342--3132Chr10:8516326..8516345 (20 bp)
CAATGTTTTCAGAGGCCGGTGGCAC
NONE
OsAffx.21938.1.S1_at--501--5851Chr01:11474431..11474453 (23 bp)
GACCAGACAGCTTTCCTTTGCAGTC
NONE
OsAffx.21938.1.S1_at--822--6753Chr09:11505842..11505862 (21 bp)
GTTCACCTCGTGTCAGAGGCTATCA
NONE
OsAffx.21938.1.S1_at--153--931Chr01:11474625..11474649 (25 bp)
AGGCTATCAGGTCCCAGAGATCTTT
NONE
Target Sequence 
GTACGGCACCGCGATAGTCTTGGACCCACTTGATTATCATCACAAGACGTACAAACAATTTCTAACAATCTTACAATATA
TGGGGATCGTTGGTGCTAGGATATACGTGTGCTCGCCCTATTTGCCAAGGCGTCACGTCGTGCTCCAGTCTGCCTGGGAA
AATGATCTTCTCAGACGGACCGGCCATCCACCTGTGAAAATTGGCGATATTCGCACGCCTTTGCCTACAGCTCTTTGTCG
GGAAAAGCTTCAATGTTTTCAGAGGCCGGTGGCACGGCGGAATCATCATGTCAGCAGCTGCCTACGCGGACGCCGAGGCA
GTGTTGCCGTAGTCCATCGCCGACCAGACAGCTTTCCTTTGCAGTCCCGATTTATAAGTGTAGGGAGACTATATGATTAC
CAAACGGGACTAAAGATCCCGGTTCACCTCGTGTCAGAGGCTATCAGGTCCCAGAGATCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21938.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis