Browse Element(s) Details


Os.49680.1.S1_at

Description gb:AK121689.1
DB_XREF= gi:37991312
TID=Os.49680.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49680 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033071C20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033071C20, full insert sequence.
FL= gb:AK121689.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5763011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57600Os.12216.1.S1_at11/114+34053596..34057602Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os04g57610Os.7177.2.S1_a_at10/114+34059415..34066783Auxin response factor 8, putative, expressed
LOC_Os04g57620OsAffx.26646.1.S1_at9/114+34073548..34077199hypothetical protein
LOC_Os04g57620OsAffx.21938.1.S1_at1/114+34073548..34077199hypothetical protein
LOC_Os04g57630Os.49680.1.S1_at11/114+34079714..34083512Leucine Rich Repeat family protein, expressed
LOC_Os04g57640Os.53757.1.S1_at11/114+34095289..34101017Poly polymerase catalytic domain containing protein, expressed
LOC_Os04g57650Os.23656.1.A1_at9/114+34102288..34105685expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49680.1.S1_at--479--751Chr04:34080255..34080279 (25 bp)
ATGTAGTGTCCTGGGTGCTTCAGAT
LOC_Os04g57630
Os.49680.1.S1_at--1136--3031Chr04:34080155..34080179 (25 bp)
AATCCTGGAGATAGCACTGCTTTGT
LOC_Os04g57630
Os.49680.1.S1_at--46--9091Chr04:34080138..34080162 (25 bp)
TGCTTTGTGTGACTGCTGCTCCTAA
LOC_Os04g57630
Os.49680.1.S1_at--76--9731Chr04:34080112..34080136 (25 bp)
TCAAGACCAACATCGCAGCAGCTAG
LOC_Os04g57630
Os.49680.1.S1_at--88--5071Chr04:34080095..34080119 (25 bp)
GCAGCTAGTCGAATGGCTTGACCAT
LOC_Os04g57630
Os.49680.1.S1_at--769--8291Chr04:34080081..34080105 (25 bp)
GGCTTGACCATATCGCTGAAGGTTA
LOC_Os04g57630
Os.49680.1.S1_at--669--9491Chr04:34079931..34079955 (25 bp)
TCTCATGCCACCCTTCAAGTAATAG
LOC_Os04g57630
Os.49680.1.S1_at--901--2471Chr04:34079818..34079842 (25 bp)
AACACCCTAGCAGTTACATAACCGG
LOC_Os04g57630
Os.49680.1.S1_at--479--2071Chr04:34079803..34079827 (25 bp)
ACATAACCGGCTTTTCTACAGATTT
LOC_Os04g57630
Os.49680.1.S1_at--62--8811Chr04:34079772..34079796 (25 bp)
TGTTCTGTAATTTCAGCTACTGCTA
LOC_Os04g57630
Os.49680.1.S1_at--355--6811Chr04:34079718..34079742 (25 bp)
GTTTTCAGTGATTTGCTCCAGCTAG
LOC_Os04g57630
Target Sequence 
ATGTAGTGTCCTGGGTGCTTCAGATGAAGAAGGAAGACAGGGAAACTGAAGTATTTGATCCAACCATATATGACAAGGAG
AATGAAAGCCAGTTGATCAGAATCCTGGAGATAGCACTGCTTTGTGTGACTGCTGCTCCTAAGTCAAGACCAACATCGCA
GCAGCTAGTCGAATGGCTTGACCATATCGCTGAAGGTTAAGGTTCAGTCAAGTTCTTAAATGGTTTCAGTTTGATCGATC
AAGATCCATCCTGATAGTTTCTTAAGATGATTAGTTCTGTAAATAATATTTACATAGCGTGAAATGCCAAGAGTTCAATT
TCCTTCTCATGCCACCCTTCAAGTAATAGTTCATATCATCCTCTTTCCTTTCTTCATAAGGTGGTTGCAAGATCACCACA
ATGTAAAAAATGCATTGTAGGTTTAAACCCTCAGGATAACACCCTAGCAGTTACATAACCGGCTTTTCTACAGATTTATT
GTATGTTCTGTAATTTCAGCTACTGCTATGGTATGAATGAACTTTTGTGGGGCANTTGTTTTCAGTGATTTGCTCCAGCT
AG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49680.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis