Browse Element(s) Details


OsAffx.26646.1.S1_at

Description tigr:9632.m05626
TID=OsAffx.26646.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g576209/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57590Os.9269.1.S1_at11/114+34048840..34051785intracellular protease, PfpI family protein, expressed
LOC_Os04g57600Os.12216.1.S1_at11/114+34053596..34057602Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os04g57610Os.7177.2.S1_a_at10/114+34059415..34066783Auxin response factor 8, putative, expressed
LOC_Os04g57620OsAffx.26646.1.S1_at9/114+34073548..34077199hypothetical protein
LOC_Os04g57620OsAffx.21938.1.S1_at1/114+34073548..34077199hypothetical protein
LOC_Os04g57630Os.49680.1.S1_at11/114+34079714..34083512Leucine Rich Repeat family protein, expressed
LOC_Os04g57640Os.53757.1.S1_at11/114+34095289..34101017Poly polymerase catalytic domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26646.1.S1_at--1155--6611Chr04:34077073..34077097 (25 bp)
GTTGGTACAACATTTGGTCCGCTGA
LOC_Os04g57620
OsAffx.26646.1.S1_at--513--7791NONE
GGTCCGCTGATAATCAACCACGAAG
NONE
OsAffx.26646.1.S1_at--905--3051Chr04:34075589..34075613 (25 bp)
AATCATGTTCATGTTCGGGAAGGCA
LOC_Os04g57620
OsAffx.26646.1.S1_at--506--5351Chr04:34075533..34075557 (25 bp)
GAAGATGCCCCGAGCACAGATCAGG
LOC_Os04g57620
OsAffx.26646.1.S1_at--490--7411Chr04:34075357..34075381 (25 bp)
GTGTTGGTTCTCAAGTATGCAGCAA
LOC_Os04g57620
OsAffx.26646.1.S1_at--32--4631Chr04:34075325..34075349 (25 bp)
GCGAGGCTATTGCTGTAGATCCACA
LOC_Os04g57620
OsAffx.26646.1.S1_at--1111--2231Chr04:34075303..34075327 (25 bp)
ACAATTCGTGATCGTGCCTCTTCAT
LOC_Os04g57620
OsAffx.26646.1.S1_at--1107--731Chr04:34075269..34075293 (25 bp)
ATGTTATTGGCTCATTGCATCTTAA
LOC_Os04g57620
OsAffx.26646.1.S1_at--1112--9051Chr04:34075254..34075278 (25 bp)
TGCATCTTAAGCTCCCAAGCACAAA
LOC_Os04g57620
OsAffx.26646.1.S1_at--420--10791Chr04:34075227..34075251 (25 bp)
TTGTCCTCAGCCATTCCTAGTAGGA
LOC_Os04g57620
OsAffx.26646.1.S1_at--4--651NONE
ATGCATGCTCGAATTTGTGTTGTAT
NONE
Target Sequence 
GTTGGTACAACATTTGGTCCGCTGATAATCAACCACGAAGAGCCGACGCCAACCAATGCCACTGCATTATCAAATCATGT
TCATGTTCGGGAAGGCAAGGAAAGGGACACCAGGAGGGAGAGGAAACGGAAGATGCCCCGAGCACAGATCAGGTGTTGGT
TCTCAAGTATGCAGCAATTATTTAGCGAGGCTATTGCTGTAGATCCACAATTCGTGATCGTGCCTCTTCATGGGGATGCC
ATGTTATTGGCTCATTGCATCTTAAGCTCCCAAGCACAAAAGTTGTCCTCAGCCATTCCTAGTAGGATCAAGGATGCATA
CATGCATGCTCGAATTTGTGTTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26646.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis