Browse Element(s) Details


Os.11407.1.S1_at

Description gb:AK106044.1
DB_XREF= gi:32991253
TID=Os.11407.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11407 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-206-E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-206-E04, full insert sequence.
FL= gb:AK106044.1 gb:AK070003.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5755011/11amine oxidase, flavin-containing family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57520Os.49659.1.S1_at11/114+33996762..34003309expressed protein
LOC_Os04g57530NANA4+34012126..34014305expressed protein
LOC_Os04g57540Os.17130.1.S1_at11/114+34017343..34019799Adenylate kinase, chloroplast precursor, putative, expressed
LOC_Os04g57550Os.11407.1.S1_at11/114+34020761..34024119amine oxidase, flavin-containing family protein, expressed
LOC_Os04g57560Os.10617.1.S1_at11/114+34025190..34029263amine oxidase, flavin-containing family protein, expressed
LOC_Os04g57570Os.28346.5.S1_at11/114+34033348..34044339retrotransposon protein, putative, unclassified
LOC_Os04g57570Os.28346.5.S1_x_at10/114+34033348..34044339retrotransposon protein, putative, unclassified
LOC_Os04g57570Os.28346.3.S1_x_at10/114+34033348..34044339retrotransposon protein, putative, unclassified
LOC_Os04g57570Os.28346.4.S1_x_at8/114+34033348..34044339retrotransposon protein, putative, unclassified
LOC_Os04g57570Os.28346.1.S1_x_at5/114+34033348..34044339retrotransposon protein, putative, unclassified
LOC_Os04g57570Os.28346.1.S1_at1/114+34033348..34044339retrotransposon protein, putative, unclassified
LOC_Os04g57580Os.28346.5.S1_at11/114+34045035..34046566retrotransposon protein, putative, unclassified
LOC_Os04g57580Os.28346.5.S1_x_at10/114+34045035..34046566retrotransposon protein, putative, unclassified
LOC_Os04g57580Os.28346.4.S1_x_at9/114+34045035..34046566retrotransposon protein, putative, unclassified
LOC_Os04g57590Os.9269.1.S1_at11/114+34048840..34051785intracellular protease, PfpI family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009911biological_processpositive regulation of flower development
GO:0016575biological_processhistone deacetylation
GO:0008131molecular_functionamine oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11407.1.S1_at--739--8631Chr04:34021285..34021309 (25 bp)
TGGGTTCCTACTCGTGCGACCTGGT
LOC_Os04g57550
Os.11407.1.S1_at--521--3811Chr04:34021222..34021246 (25 bp)
CGGTGGAGAACCTCTACTTCGCCGG
LOC_Os04g57550
Os.11407.1.S1_at--858--691Chr04:34021129..34021153 (25 bp)
ATGAGTGCCGGAAGCGCATCCTGAT
LOC_Os04g57550
Os.11407.1.S1_at--49--3731Chr04:34021068..34021092 (25 bp)
CTACGAGGAGATGGCCGGAGTCATT
LOC_Os04g57550
Os.11407.1.S1_at--718--8031Chr04:34021052..34021076 (25 bp)
GGAGTCATTGCTCCCCTTCAGATTT
LOC_Os04g57550
Os.11407.1.S1_at--321--4211Chr04:34021040..34021064 (25 bp)
CCCCTTCAGATTTGCAGGACCTGAA
LOC_Os04g57550
Os.11407.1.S1_at--904--9211Chr04:34021001..34021025 (25 bp)
TCCACCCTGCCATTGTCATGGAATC
LOC_Os04g57550
Os.11407.1.S1_at--207--7931Chr04:34020975..34020999 (25 bp)
GGATTGATTCAATTGCCATGCCTAT
LOC_Os04g57550
Os.11407.1.S1_at--744--591Chr04:34020958..34020982 (25 bp)
ATGCCTATGCCCTGGAATCTTGATG
LOC_Os04g57550
Os.11407.1.S1_at--1059--6551Chr04:34020934..34020958 (25 bp)
GATTCAATCACTCATACAAGTTCAA
LOC_Os04g57550
Os.11407.1.S1_at--991--631Chr04:34020819..34020843 (25 bp)
ATGCTTGAGATCTTTGTACTGGGAC
LOC_Os04g57550
Target Sequence 
TGGGTTCCTACTCGTGCGACCTGGTCGGGAAGCCGGCCGACGTGTCGGCGCGGTTCGCCGCNACCGGTGGAGAACCTCTA
CTTCGCCGGCGAGGCGGCCAGCGCCGACCACTCGGGGTCCGTCCACGGCGCCTACTCGTCGGGGATCGCCGCCGCCGATG
AGTGCCGGAAGCGCATCCTGATGCAGAAGGGCATCCCTGACCTCGTCCAGGTCAAGGCCTACGAGGAGATGGCCGGAGTC
ATTGCTCCCCTTCAGATTTGCAGGACCTGAAAAAACTGAACCTGCTCCACCCTGCCATTGTCATGGAATCTGGATTGATT
CAATTGCCATGCCTATGCCCTGGAATCTTGATGATTCAATCACTCATACAAGTTCAAGTTCATGTAGGGGATTAACTGCA
TGAATCAAAATTATTAATTAATAATTATGTAATTGTCATGTTATTATTGAATAAATAAATCGAGATCATGCTTGAGATCT
TTGTACTGGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11407.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis