Browse Element(s) Details


Os.28346.5.S1_x_at

Description gb:NM_185192.1
DB_XREF= gi:34897469
TID=Os.28346.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.28346 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative Zea mays retrotransposon Opie-2 (OSJNBa0009C08.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0096M04.105), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6312411/11retrotransposon protein, putative, unclassified
LOC_Os03g0167010/11E1-E2 ATPase family protein
LOC_Os03g0168410/11retrotransposon protein, putative, unclassified
LOC_Os03g1326010/11retrotransposon protein, putative, unclassified
LOC_Os04g5758010/11retrotransposon protein, putative, unclassified
LOC_Os04g5757010/11retrotransposon protein, putative, unclassified
LOC_Os08g306702/11retrotransposon protein, putative, unclassified
LOC_Os01g038301/11retrotransposon protein, putative, unclassified
LOC_Os06g413401/11retrotransposon protein, putative, unclassified
LOC_Os09g286801/11retrotransposon protein, putative, unclassified
LOC_Os09g158401/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63050OsAffx.10401.1.S1_at6/113+35592938..35593615hypothetical protein
LOC_Os03g63060Os.15918.1.S1_x_at11/113+35596426..35597816P21-Rho-binding domain containing protein, expressed
LOC_Os03g63074Os.16644.1.A1_at11/113+35598767..35605915Ser/Thr protein phosphatase family protein, expressed
LOC_Os03g63074Os.14750.1.S1_x_at9/113+35598767..35605915Ser/Thr protein phosphatase family protein, expressed
LOC_Os03g63074Os.14750.1.S1_at1/113+35598767..35605915Ser/Thr protein phosphatase family protein, expressed
LOC_Os03g63090Os.16908.1.S1_at11/113+35608593..35611728Actin-related protein 2/3 complex subunit 4, putative, expressed
LOC_Os03g63110Os.35410.1.S1_at11/113+35612602..35615784B-cell receptor-associated protein 31-like containing protein, expressed
LOC_Os03g63124Os.28346.5.S1_at11/113+35616990..35624977retrotransposon protein, putative, unclassified
LOC_Os03g63124Os.28346.5.S1_x_at11/113+35616990..35624977retrotransposon protein, putative, unclassified
LOC_Os03g63124Os.28346.3.S1_x_at10/113+35616990..35624977retrotransposon protein, putative, unclassified
LOC_Os03g63124Os.28346.4.S1_x_at8/113+35616990..35624977retrotransposon protein, putative, unclassified
LOC_Os03g63140Os.8727.1.S1_at10/113+35628426..35631287Nitrate-induced NOI protein, expressed
LOC_Os03g63140OsAffx.25806.1.S1_at2/113+35628426..35631287Nitrate-induced NOI protein, expressed
LOC_Os03g63150Os.35787.2.S1_at11/113+35632219..35637943powdery mildew resistance protein PM3b, putative, expressed
LOC_Os03g63150Os.35787.1.S1_at11/113+35632219..35637943powdery mildew resistance protein PM3b, putative, expressed
LOC_Os03g63150Os.35787.1.S1_x_at11/113+35632219..35637943powdery mildew resistance protein PM3b, putative, expressed
LOC_Os03g63160OsAffx.25806.1.S1_at11/113+35641868..35642997hypothetical protein
LOC_Os03g63170OsAffx.5116.1.S1_at10/113+35643625..35645941transposon protein, putative, unclassified
LOC_Os03g63190NANA3+35648360..35649242hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008553molecular_functionhydrogen-exporting ATPase activity, phosphorylative mechanism
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28346.5.S1_x_at--1092--18312Chr08:18776365..18776389 (25 bp)
ACGAACACCGTGTGAGGAGGTCTTT
LOC_Os08g30670
Os.28346.5.S1_x_at--336--61511Chr06:2775938..2775961 (24 bp)
GAGGTCTTTGCAACAGGCTTCACAA
NONE
Os.28346.5.S1_x_at--847--51311Chr06:2775946..2776181 (25 bp)
GCAACAGGCTTCACAAGGGAGGCCA
NONE
Os.28346.5.S1_x_at--892--16513Chr08:18776595..18776615 (21 bp)
AGCCGTTCCACGTGGCCCAAGATGG
LOC_Os08g30670
Os.28346.5.S1_x_at--686--41711Chr06:2776206..2776230 (25 bp)
CCCAAGATGGTGAATGGCTCGGCTC
NONE
Os.28346.5.S1_x_at--496--8911Chr06:2776234..2776258 (25 bp)
AGGCCTGCATCGTCCAAGCAGCGAC
NONE
Os.28346.5.S1_x_at--346--81111Chr06:2776394..2776418 (25 bp)
GGACCCACACGCGATTTTGCAAGCG
NONE
Os.28346.5.S1_x_at--248--23111Chr06:2776491..2776515 (25 bp)
AAAGGAGACGGAACGCGCACGACGC
NONE
Os.28346.5.S1_x_at--108--25711Chr06:2776524..2776548 (25 bp)
AACGTGGCAAGTTTGGATTCGTCAA
NONE
Os.28346.5.S1_x_at--182--106311Chr06:2776541..2776565 (25 bp)
TTCGTCAAGACGGAGAGCACGCGGA
NONE
Os.28346.5.S1_x_at--161--59511Chr06:2776555..2776579 (25 bp)
GAGCACGCGGATTCATCAGCAAGAA
NONE
Target Sequence 
ACGAACACCGTGTGAGGAGGTCTTTGCAACAGGCTTCACAAGGGAGGCCAAGCCAATCCAGCCGTTCCACGTGGCCCAAG
ATGGTGAATGGCTCGGCTCGGCAGGCCTGCATCGTCCAAGCAGCGACGGCCCAAGACGGCGGCCCATGGCGCATGGGCTC
AGGAGGAGCGCGGGACCCACACGCGATTTTGCAAGCGCGCGCGGGAGCGGCTCAGCGGGACGCGTGGCGGCTTCGGGCTG
GTTGGGCGCTGGCGAGCGCGCGCTGAGGAAAAGGAGACGGAACGCGCACGACGCGGCTGGGCAACGTGGCAAGTTTGGAT
TCGTCAAGACGGAGAGCACGCGGATTCATCAGCAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28346.5.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis