Browse Element(s) Details

Os.16644.1.A1_at

Description

gb:AK072278.1
DB_XREF= gi:32982301
TID=Os.16644.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16644 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative phytase (OSJNBb0096M04.130), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023018A12, full insert sequence.
FL= gb:AK072278.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g63074	11/11	Ser/Thr protein phosphatase family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g63020	Os.8119.1.S1_at	11/11	3	+	35572600..35577646	Serine/threonine-protein kinase MHK, putative, expressed
LOC_Os03g63030	Os.35344.18.S1_x_at	11/11	3	+	35579471..35583282	transposon protein, putative, Mutator sub-class
LOC_Os03g63030	Os.35344.3.S1_x_at	9/11	3	+	35579471..35583282	transposon protein, putative, Mutator sub-class
LOC_Os03g63030	OsAffx.22940.5.S1_x_at	3/11	3	+	35579471..35583282	transposon protein, putative, Mutator sub-class
LOC_Os03g63040	Os.51390.1.S1_at	5/11	3	+	35586951..35591762	expressed protein
LOC_Os03g63040	Os.51390.1.S1_x_at	5/11	3	+	35586951..35591762	expressed protein
LOC_Os03g63040	Os.5292.1.S1_at	4/11	3	+	35586951..35591762	expressed protein
LOC_Os03g63050	OsAffx.10401.1.S1_at	6/11	3	+	35592938..35593615	hypothetical protein
LOC_Os03g63060	Os.15918.1.S1_x_at	11/11	3	+	35596426..35597816	P21-Rho-binding domain containing protein, expressed
LOC_Os03g63074	Os.16644.1.A1_at	11/11	3	+	35598767..35605915	Ser/Thr protein phosphatase family protein, expressed
LOC_Os03g63074	Os.14750.1.S1_x_at	9/11	3	+	35598767..35605915	Ser/Thr protein phosphatase family protein, expressed
LOC_Os03g63074	Os.14750.1.S1_at	1/11	3	+	35598767..35605915	Ser/Thr protein phosphatase family protein, expressed
LOC_Os03g63090	Os.16908.1.S1_at	11/11	3	+	35608593..35611728	Actin-related protein 2/3 complex subunit 4, putative, expressed
LOC_Os03g63110	Os.35410.1.S1_at	11/11	3	+	35612602..35615784	B-cell receptor-associated protein 31-like containing protein, expressed
LOC_Os03g63124	Os.28346.5.S1_at	11/11	3	+	35616990..35624977	retrotransposon protein, putative, unclassified
LOC_Os03g63124	Os.28346.5.S1_x_at	11/11	3	+	35616990..35624977	retrotransposon protein, putative, unclassified
LOC_Os03g63124	Os.28346.3.S1_x_at	10/11	3	+	35616990..35624977	retrotransposon protein, putative, unclassified
LOC_Os03g63124	Os.28346.4.S1_x_at	8/11	3	+	35616990..35624977	retrotransposon protein, putative, unclassified
LOC_Os03g63140	Os.8727.1.S1_at	10/11	3	+	35628426..35631287	Nitrate-induced NOI protein, expressed
LOC_Os03g63140	OsAffx.25806.1.S1_at	2/11	3	+	35628426..35631287	Nitrate-induced NOI protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0003993	molecular_function	acid phosphatase activity
GO:0004722	molecular_function	protein serine/threonine phosphatase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.16644.1.A1_at--755--823	1	Chr03:35603874..35603898 (25 bp)	GGCAACCGCGAGAAGATGGCCACCA	LOC_Os03g63074
Os.16644.1.A1_at--981--409	1	Chr03:35603719..35603743 (25 bp)	CGACTACAGCGCCTACCGGGAGAGC	LOC_Os03g63074
Os.16644.1.A1_at--139--507	1	Chr03:35603696..35603720 (25 bp)	GCAGCTTCGGCCATGGCATTCTTGA	LOC_Os03g63074
Os.16644.1.A1_at--230--185	1	Chr03:35603572..35603596 (25 bp)	ACGCATGCGTTGTGGAGATGGCACA	LOC_Os03g63074
Os.16644.1.A1_at--227--265	1	Chr03:35603545..35603569 (25 bp)	AACCAGGATCTGTACGGTAGTGTCG	LOC_Os03g63074
Os.16644.1.A1_at--990--653	1	Chr03:35603513..35603537 (25 bp)	GATTTACATTGTTCGGGAGCCTGAC	LOC_Os03g63074
Os.16644.1.A1_at--644--809	1	Chr03:35603498..35603522 (25 bp)	GGAGCCTGACAAGTGCCTGATCAAA	LOC_Os03g63074
Os.16644.1.A1_at--456--137	1	Chr03:35603425..35603449 (25 bp)	AGAGCCAAATTACGCGGGCACATTT	LOC_Os03g63074
Os.16644.1.A1_at--158--489	1	Chr03:35603394..35603418 (25 bp)	GCTTTGCTAGCTAGTTGTACTCAGA	LOC_Os03g63074
Os.16644.1.A1_at--745--783	1	Chr03:35603362..35603386 (25 bp)	GGTAAATTCCATGCAGCGACCGGCA	LOC_Os03g63074
Os.16644.1.A1_at--204--949	1	Chr03:35603335..35603359 (25 bp)	TCTGCTGTTGTATACGTGTTCTTGT	LOC_Os03g63074

Target Sequence

GGCAACCGCGAGAAGATGGCCACCAGCTACGCCGACGAGCCGGGGCGCTGCCCTGACCCGCTGTCCACGCCGGACCCCTT
CATGGGCGGCGGCTTNTGCGGCTTCAACTTCACCTCCGGCCCCGCCGCCGGCAGCTTNTGCTGGGACCGGCAGCCCGACT
ACAGCGCCTACCGGGAGAGCAGCTTCGGCCATGGCATTCTTGAGGTGAAGAACGAGACGCATGCGTTGTGGAGATGGCAC
AGGAACCAGGATCTGTACGGTAGTGTCGGGGATGAGATTTACATTGTTCGGGAGCCTGACAAGTGCCTGATCAAATCCAG
TAGAAATAGAATAGCTTACTATTGATTAATTTCTATCAGAAGAAGAGCCAAATTACGCGGGCACATTTTATAGTGCTTTG
CTAGCTAGTTGTACTCAGATTTGTCAGGTAAATTCCATGCAGCGACCGGCATCTCTGCTGTTGTATACGTGTTCTTGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis