Browse Element(s) Details


OsAffx.10401.1.S1_at

Description tigr:9631.m06235
TID=OsAffx.10401.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g630506/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63010Os.25587.2.S1_at10/113+35564574..35568552Immutans protein, putative, expressed
LOC_Os03g63010Os.25587.3.S1_x_at10/113+35564574..35568552Immutans protein, putative, expressed
LOC_Os03g63010Os.19042.1.S1_at3/113+35564574..35568552Immutans protein, putative, expressed
LOC_Os03g63020Os.8119.1.S1_at11/113+35572600..35577646Serine/threonine-protein kinase MHK, putative, expressed
LOC_Os03g63030Os.35344.18.S1_x_at11/113+35579471..35583282transposon protein, putative, Mutator sub-class
LOC_Os03g63030Os.35344.3.S1_x_at9/113+35579471..35583282transposon protein, putative, Mutator sub-class
LOC_Os03g63030OsAffx.22940.5.S1_x_at3/113+35579471..35583282transposon protein, putative, Mutator sub-class
LOC_Os03g63040Os.51390.1.S1_at5/113+35586951..35591762expressed protein
LOC_Os03g63040Os.51390.1.S1_x_at5/113+35586951..35591762expressed protein
LOC_Os03g63040Os.5292.1.S1_at4/113+35586951..35591762expressed protein
LOC_Os03g63050OsAffx.10401.1.S1_at6/113+35592938..35593615hypothetical protein
LOC_Os03g63060Os.15918.1.S1_x_at11/113+35596426..35597816P21-Rho-binding domain containing protein, expressed
LOC_Os03g63074Os.16644.1.A1_at11/113+35598767..35605915Ser/Thr protein phosphatase family protein, expressed
LOC_Os03g63074Os.14750.1.S1_x_at9/113+35598767..35605915Ser/Thr protein phosphatase family protein, expressed
LOC_Os03g63074Os.14750.1.S1_at1/113+35598767..35605915Ser/Thr protein phosphatase family protein, expressed
LOC_Os03g63090Os.16908.1.S1_at11/113+35608593..35611728Actin-related protein 2/3 complex subunit 4, putative, expressed
LOC_Os03g63110Os.35410.1.S1_at11/113+35612602..35615784B-cell receptor-associated protein 31-like containing protein, expressed
LOC_Os03g63124Os.28346.5.S1_at11/113+35616990..35624977retrotransposon protein, putative, unclassified
LOC_Os03g63124Os.28346.5.S1_x_at11/113+35616990..35624977retrotransposon protein, putative, unclassified
LOC_Os03g63124Os.28346.3.S1_x_at10/113+35616990..35624977retrotransposon protein, putative, unclassified
LOC_Os03g63124Os.28346.4.S1_x_at8/113+35616990..35624977retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10401.1.S1_at--621--9831Chr03:35592846..35592870 (25 bp)
TAAACTCGCCTAATGGTGCACCTAA
NONE
OsAffx.10401.1.S1_at--487--7771Chr03:35592860..35592884 (25 bp)
GGTGCACCTAATGTTTATCATCAGT
NONE
OsAffx.10401.1.S1_at--854--10051Chr03:35592892..35592916 (25 bp)
TAGTCAAGTCAATCATCGAGCGAAC
NONE
OsAffx.10401.1.S1_at--1067--9511Chr03:35592919..35592943 (25 bp)
TCTAACAGGCAGTCAGGCAATGGCA
NONE
OsAffx.10401.1.S1_at--325--851Chr03:35592938..35592962 (25 bp)
ATGGCAAAATTAGACGGCACGGCTA
NONE
OsAffx.10401.1.S1_at--901--5991Chr03:35592970..35592994 (25 bp)
GAGAGAGCCCCACAAAGCGGTAAGT
LOC_Os03g63050
OsAffx.10401.1.S1_at--335--8691Chr03:35593032..35593056 (25 bp)
TGTCCAGTATTGCATACGCAGCACT
LOC_Os03g63050
OsAffx.10401.1.S1_at--92--8011Chr03:35593077..35593101 (25 bp)
GGAGGCTATCCGTGAGTAAGAACAT
LOC_Os03g63050
OsAffx.10401.1.S1_at--1009--7871Chr03:35593114..35593383 (25 bp)
GGTTATTTCATTTCTGCCCAACAAA
LOC_Os03g63050
OsAffx.10401.1.S1_at--1133--7431Chr03:35593500..35593524 (25 bp)
GTGTACTTGGAAAGGCTGACTCTGC
LOC_Os03g63050
OsAffx.10401.1.S1_at--400--8951Chr03:35593516..35593540 (25 bp)
TGACTCTGCCTATGCAATTGCACAA
LOC_Os03g63050
Target Sequence 
TAAACTCGCCTAATGGTGCACCTAATGTTTATCATCAGTTTGTCATTAGTCAAGTCAATCATCGAGCGAACAATCTAACA
GGCAGTCAGGCAATGGCAAAATTAGACGGCACGGCTAATAAGAGGAGAGAGCCCCACAAAGCGGTAAGTGCAGTGCATGA
CAGCATGAGCATGACAAGACTGTATATGTCCAGTATTGCATACGCAGCACTGGAGAAGTGGTCTGGAAAATGGAGGCTAT
CCGTGAGTAAGAACATAAGAACCAATTTGGTTATTTCATTTCTGCCCAACAAAAACTGCCTGGCAGAGGCAGAGGCAGGT
GCACTTGGAAAGGCGATAGTGAGGCGTGTACTTGGAAAGGCTGACTCTGCCTATGCAATTGCACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10401.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis