Browse Element(s) Details


Os.16908.1.S1_at

Description gb:AK102089.1
DB_XREF= gi:32987298
TID=Os.16908.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.16908 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative actin-related complex protein (OSJNBb0096M04.125), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033082P03, full insert sequence.
FL= gb:AK102089.1 gb:AK059137.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6309011/11Actin-related protein 2/3 complex subunit 4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63040Os.51390.1.S1_at5/113+35586951..35591762expressed protein
LOC_Os03g63040Os.51390.1.S1_x_at5/113+35586951..35591762expressed protein
LOC_Os03g63040Os.5292.1.S1_at4/113+35586951..35591762expressed protein
LOC_Os03g63050OsAffx.10401.1.S1_at6/113+35592938..35593615hypothetical protein
LOC_Os03g63060Os.15918.1.S1_x_at11/113+35596426..35597816P21-Rho-binding domain containing protein, expressed
LOC_Os03g63074Os.16644.1.A1_at11/113+35598767..35605915Ser/Thr protein phosphatase family protein, expressed
LOC_Os03g63074Os.14750.1.S1_x_at9/113+35598767..35605915Ser/Thr protein phosphatase family protein, expressed
LOC_Os03g63074Os.14750.1.S1_at1/113+35598767..35605915Ser/Thr protein phosphatase family protein, expressed
LOC_Os03g63090Os.16908.1.S1_at11/113+35608593..35611728Actin-related protein 2/3 complex subunit 4, putative, expressed
LOC_Os03g63110Os.35410.1.S1_at11/113+35612602..35615784B-cell receptor-associated protein 31-like containing protein, expressed
LOC_Os03g63124Os.28346.5.S1_at11/113+35616990..35624977retrotransposon protein, putative, unclassified
LOC_Os03g63124Os.28346.5.S1_x_at11/113+35616990..35624977retrotransposon protein, putative, unclassified
LOC_Os03g63124Os.28346.3.S1_x_at10/113+35616990..35624977retrotransposon protein, putative, unclassified
LOC_Os03g63124Os.28346.4.S1_x_at8/113+35616990..35624977retrotransposon protein, putative, unclassified
LOC_Os03g63140Os.8727.1.S1_at10/113+35628426..35631287Nitrate-induced NOI protein, expressed
LOC_Os03g63140OsAffx.25806.1.S1_at2/113+35628426..35631287Nitrate-induced NOI protein, expressed
LOC_Os03g63150Os.35787.2.S1_at11/113+35632219..35637943powdery mildew resistance protein PM3b, putative, expressed
LOC_Os03g63150Os.35787.1.S1_at11/113+35632219..35637943powdery mildew resistance protein PM3b, putative, expressed
LOC_Os03g63150Os.35787.1.S1_x_at11/113+35632219..35637943powdery mildew resistance protein PM3b, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007015biological_processactin filament organization
GO:0005885cellular_componentArp2/3 protein complex
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16908.1.S1_at--355--2391Chr03:35611052..35611076 (25 bp)
AAACTACCACTGTGAGGACATGCAC
LOC_Os03g63090
Os.16908.1.S1_at--300--6751Chr03:35611101..35611211 (25 bp)
GTTCAGTTTATGGAGGACATCGACA
LOC_Os03g63090
Os.16908.1.S1_at--404--1191Chr03:35611230..35611254 (25 bp)
AGCTTTCGGTAAATACACGTGGTCG
LOC_Os03g63090
Os.16908.1.S1_at--131--9871Chr03:35611243..35611267 (25 bp)
TACACGTGGTCGGTTAGTGGCAACT
LOC_Os03g63090
Os.16908.1.S1_at--803--10071Chr03:35611257..35611281 (25 bp)
TAGTGGCAACTGAATTCCTGAAGCA
LOC_Os03g63090
Os.16908.1.S1_at--1017--251Chr03:35611286..35611310 (25 bp)
ATATGACACATTCTTGGCGATCTTT
LOC_Os03g63090
Os.16908.1.S1_at--444--5311Chr03:35611372..35611396 (25 bp)
GAAGGATCTTTCCACCACTTTGTTT
LOC_Os03g63090
Os.16908.1.S1_at--93--3271Chr03:35611440..35611464 (25 bp)
CAACTAGACCTCATTGGCAGCTAAA
LOC_Os03g63090
Os.16908.1.S1_at--35--1851Chr03:35611647..35611671 (25 bp)
ACGCTTGTTGTCTCTGATTCTGATT
LOC_Os03g63090
Os.16908.1.S1_at--808--9471Chr03:35611665..35611689 (25 bp)
TCTGATTTCAGTTCCATGGCAGGCT
LOC_Os03g63090
Os.16908.1.S1_at--532--8331Chr03:35611686..35611710 (25 bp)
GGCTGCCTTAGCTGCGTAAATATAT
LOC_Os03g63090
Target Sequence 
AAACTACCACTGTGAGGACATGCACAAGCATAAGCTCATAGATTTCATTGTTCAGTTTATGGAGGACATCGACAAGGAGA
TCAGTGAGCTAAAGCTTTCGGTAAATACACGTGGTCGGTTAGTGGCAACTGAATTCCTGAAGCAGTTCATATGACACATT
CTTGGCGATCTTTGGAAAACATAAAACCCTAGCATTGTTAGCTATGCTGTCTTGGCCTTTGGCGAGCANAATCTGGAAGG
ATCTTTCCACCACTTTGTTTTCCTTTTGTAAATGCGTTGACAAGGATATGTGAATTCTTGATCCAACTAGACCTCATTGG
CAGCTAAAATCTGCCCAGGCAAGAGAGATGAGGGGAAACAAAGTCATGGTCAGTAGGTTGAGATAGATTTTTTGGCCTTT
TGGTTCAAGAATCCTGTACTGTGCCGGCCAAGTTTTATTGGAATGTGGAATGTCAAAATTGGGGCTGATTCTGATTCTGA
TATGTCAAAATTGGAATGTGAAAATCAGAGACGCTTGTTGTCTCTGATTCTGATTTCAGTTCCATGGCAGGCTGCCTTAG
CTGCGTAAATATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16908.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis