Browse Element(s) Details


Os.35787.1.S1_at

Description gb:AK065798.1
DB_XREF= gi:32975816
TID=Os.35787.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35787 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative resistance complex protein (OSJNBb0096M04.95), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013039L06, full insert sequence.
FL= gb:AK065798.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6315011/11powdery mildew resistance protein PM3b, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63090Os.16908.1.S1_at11/113+35608593..35611728Actin-related protein 2/3 complex subunit 4, putative, expressed
LOC_Os03g63110Os.35410.1.S1_at11/113+35612602..35615784B-cell receptor-associated protein 31-like containing protein, expressed
LOC_Os03g63124Os.28346.5.S1_at11/113+35616990..35624977retrotransposon protein, putative, unclassified
LOC_Os03g63124Os.28346.5.S1_x_at11/113+35616990..35624977retrotransposon protein, putative, unclassified
LOC_Os03g63124Os.28346.3.S1_x_at10/113+35616990..35624977retrotransposon protein, putative, unclassified
LOC_Os03g63124Os.28346.4.S1_x_at8/113+35616990..35624977retrotransposon protein, putative, unclassified
LOC_Os03g63140Os.8727.1.S1_at10/113+35628426..35631287Nitrate-induced NOI protein, expressed
LOC_Os03g63140OsAffx.25806.1.S1_at2/113+35628426..35631287Nitrate-induced NOI protein, expressed
LOC_Os03g63150Os.35787.2.S1_at11/113+35632219..35637943powdery mildew resistance protein PM3b, putative, expressed
LOC_Os03g63150Os.35787.1.S1_at11/113+35632219..35637943powdery mildew resistance protein PM3b, putative, expressed
LOC_Os03g63150Os.35787.1.S1_x_at11/113+35632219..35637943powdery mildew resistance protein PM3b, putative, expressed
LOC_Os03g63160OsAffx.25806.1.S1_at11/113+35641868..35642997hypothetical protein
LOC_Os03g63170OsAffx.5116.1.S1_at10/113+35643625..35645941transposon protein, putative, unclassified
LOC_Os03g63190NANA3+35648360..35649242hypothetical protein
LOC_Os03g63200Os.44928.1.S1_at11/113+35650256..35654709powdery mildew resistance protein PM3b, putative, expressed
LOC_Os03g63210OsAffx.25807.1.S1_at11/113+35657592..35658741hypothetical protein
LOC_Os03g63210Os.52410.1.S1_x_at1/113+35657592..35658741hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35787.1.S1_at--806--6051Chr03:35632546..35632660 (25 bp)
GAGTTGTCATCATGGATCGTTACCG
LOC_Os03g63150
Os.35787.1.S1_at--280--10471Chr03:35632467..35632491 (25 bp)
TTACCTACCTACCTTTTCTCAAGAT
LOC_Os03g63150
Os.35787.1.S1_at--414--3671Chr03:35632455..35632479 (25 bp)
CTTTTCTCAAGATAAACTCCACTAA
LOC_Os03g63150
Os.35787.1.S1_at--536--6471Chr03:35632445..35632469 (25 bp)
GATAAACTCCACTAAAGTCGATCTT
LOC_Os03g63150
Os.35787.1.S1_at--1080--2531Chr03:35632441..35632465 (25 bp)
AACTCCACTAAAGTCGATCTTCTGT
LOC_Os03g63150
Os.35787.1.S1_at--1129--2311Chr03:35632432..35632456 (25 bp)
AAAGTCGATCTTCTGTTTGGTGTTG
LOC_Os03g63150
Os.35787.1.S1_at--312--1151Chr03:35632430..35632454 (25 bp)
AGTCGATCTTCTGTTTGGTGTTGTT
LOC_Os03g63150
Os.35787.1.S1_at--408--6431Chr03:35632426..35632450 (25 bp)
GATCTTCTGTTTGGTGTTGTTGAGT
LOC_Os03g63150
Os.35787.1.S1_at--853--7752Chr03:35632414..35632438 (25 bp)
GGTGTTGTTGAGTTGTGGTCCAAAT
LOC_Os03g63150
Os.35787.1.S1_at--330--4131Chr03:35632342..35632366 (25 bp)
CCCGTCGTCGGGAGGCTTGGGCTGG
LOC_Os03g63150
Os.35787.1.S1_at--604--4533Chr04:27791870..27791920 (25 bp)
GCCCGTCATCCCTTTTAGAGTTCCA
NONE
Target Sequence 
GAGTTGTCATCATGGATCGTTACCGAATCTGCAATTGTTGGGTTATTAATTGTGTGATTGTATCTCATGGTAGAATGTAT
TACCTACCTACCTTTTCTCAAGATAAACTCCACTAAAGTCGATCTTCTGTTTGGTGTTGTTGAGTTGTGGTCCAAATTTA
TTTGCACTTAATAAATGCCAGCTTCTGCCGTAGCGGAGCGGAGGCCCGTCGTCGGGAGGCTTGGGCTGGAGCGTCGCCGG
GAGGCCTGCCCGTCATCCCTTTTAGAGTTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35787.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis