Browse Element(s) Details


Os.44928.1.S1_at

Description gb:NM_185185.1
DB_XREF= gi:34897455
GEN=OSJNBb0096M04.70
TID=Os.44928.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.44928 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative resistance complex protein (OSJNBb0096M04.70), mRNA.
PROD=putative resistance complex protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6320011/11powdery mildew resistance protein PM3b, putative, expressed
LOC_Os03g632202/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63140Os.8727.1.S1_at10/113+35628426..35631287Nitrate-induced NOI protein, expressed
LOC_Os03g63140OsAffx.25806.1.S1_at2/113+35628426..35631287Nitrate-induced NOI protein, expressed
LOC_Os03g63150Os.35787.2.S1_at11/113+35632219..35637943powdery mildew resistance protein PM3b, putative, expressed
LOC_Os03g63150Os.35787.1.S1_at11/113+35632219..35637943powdery mildew resistance protein PM3b, putative, expressed
LOC_Os03g63150Os.35787.1.S1_x_at11/113+35632219..35637943powdery mildew resistance protein PM3b, putative, expressed
LOC_Os03g63160OsAffx.25806.1.S1_at11/113+35641868..35642997hypothetical protein
LOC_Os03g63170OsAffx.5116.1.S1_at10/113+35643625..35645941transposon protein, putative, unclassified
LOC_Os03g63190NANA3+35648360..35649242hypothetical protein
LOC_Os03g63200Os.44928.1.S1_at11/113+35650256..35654709powdery mildew resistance protein PM3b, putative, expressed
LOC_Os03g63210OsAffx.25807.1.S1_at11/113+35657592..35658741hypothetical protein
LOC_Os03g63210Os.52410.1.S1_x_at1/113+35657592..35658741hypothetical protein
LOC_Os03g63220Os.44928.1.S1_at2/113+35664909..35666128Leucine Rich Repeat family protein
LOC_Os03g63220Os.35787.1.S1_x_at2/113+35664909..35666128Leucine Rich Repeat family protein
LOC_Os03g63230OsAffx.22641.1.S1_at11/113+35666801..35668212retrotransposon protein, putative, LINE subclass
LOC_Os03g63240Os.49396.1.S1_x_at1/113+35668814..35671051NB-ARC domain containing protein, expressed
LOC_Os03g63250Os.7292.1.S1_at11/113+35675018..35680540brefeldin A-sensitive Golgi protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44928.1.S1_at--377--6951Chr03:35651346..35651370 (25 bp)
GTAGAGATGCCCAACTTATCTGCGT
LOC_Os03g63200
Os.44928.1.S1_at--235--2532Chr03:35651334..35651358 (25 bp)
AACTTATCTGCGTCTCTCAAGCTAT
LOC_Os03g63200
Os.44928.1.S1_at--872--10111Chr03:35651302..35651326 (25 bp)
TATGAACTGCTTTGGCCTGAAGTCC
LOC_Os03g63200
Os.44928.1.S1_at--145--6771Chr03:35651229..35651253 (25 bp)
GTTACACGGCCGGATAGGTCATCAT
LOC_Os03g63200
Os.44928.1.S1_at--50--6451Chr03:35651175..35651199 (25 bp)
GATCACATCCTTCCATGCCTAGAAT
LOC_Os03g63200
Os.44928.1.S1_at--947--1652Chr03:35651138..35651162 (25 bp)
AGCGCTGTGATCGTTTGGAGGTTCT
LOC_Os03g63200
Os.44928.1.S1_at--985--5511Chr03:35651070..35651094 (25 bp)
GAAAATCTTCAGTCCCTTTCAGGAA
LOC_Os03g63200
Os.44928.1.S1_at--854--7231Chr03:35650966..35650990 (25 bp)
GTCGCTGGAACAACTCGATCTTTTT
LOC_Os03g63200
Os.44928.1.S1_at--816--2771Chr03:35650935..35650959 (25 bp)
AAGAGCCTAGTATCCTTGCCCGAGG
LOC_Os03g63200
Os.44928.1.S1_at--662--6891Chr03:35650859..35650883 (25 bp)
GTATAGAGTTGCTTCCACTGAGCCT
LOC_Os03g63200
Os.44928.1.S1_at--995--1471Chr03:35650832..35650856 (25 bp)
AGCAACGTCTGGATTACCTCGAGGA
LOC_Os03g63200
Target Sequence 
GTAGAGATGCCCAACTTATCTGCGTCTCTCAAGCTATTAGAAATTATGAACTGCTTTGGCCTGAAGTCCATCATATTCAG
TCAGCAGCATGATAGGAGGTTGGTGAGTGCAGAAAGTGTTACACGGCCGGATAGGTCATCATTAATAGCAGGGTCCAGCA
GTGGGACCAACGATCACATCCTTCCATGCCTAGAATCTCTAGCAATAAAGCGCTGTGATCGTTTGGAGGTTCTCCATCTT
CCTCCGTCCATCAAGAAATTGGAAATTTTGAAATGTGAAAATCTTCAGTCCCTTTCAGGAAAACTGGATGCCGTTCGAGC
ATTAATAATCAGATCATGCGAGAGCTTGAAATCACTAGAATCTTGCTTAGGAGAGCTCCCGTCGCTGGAACAACTCGATC
TTTTTGATTGCAAGAGCCTAGTATCCTTGCCCGAGGGGCCTCAAGCATACTCATCTCTTAGATTTCTTACAATTGATTCT
TGTTCTGGTATAGAGTTGCTTCCACTGAGCCTGCAGCAACGTCTGGATTACCTCGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44928.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis