Browse Element(s) Details


Os.35787.2.S1_at

Description gb:CB671459
DB_XREF= gi:29675184
DB_XREF=OSJNEe05A23.r
CLONE=OSJNEe05A23
TID=Os.35787.2
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.35787 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative resistance complex protein (OSJNBb0096M04.95), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6315011/11powdery mildew resistance protein PM3b, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63090Os.16908.1.S1_at11/113+35608593..35611728Actin-related protein 2/3 complex subunit 4, putative, expressed
LOC_Os03g63110Os.35410.1.S1_at11/113+35612602..35615784B-cell receptor-associated protein 31-like containing protein, expressed
LOC_Os03g63124Os.28346.5.S1_at11/113+35616990..35624977retrotransposon protein, putative, unclassified
LOC_Os03g63124Os.28346.5.S1_x_at11/113+35616990..35624977retrotransposon protein, putative, unclassified
LOC_Os03g63124Os.28346.3.S1_x_at10/113+35616990..35624977retrotransposon protein, putative, unclassified
LOC_Os03g63124Os.28346.4.S1_x_at8/113+35616990..35624977retrotransposon protein, putative, unclassified
LOC_Os03g63140Os.8727.1.S1_at10/113+35628426..35631287Nitrate-induced NOI protein, expressed
LOC_Os03g63140OsAffx.25806.1.S1_at2/113+35628426..35631287Nitrate-induced NOI protein, expressed
LOC_Os03g63150Os.35787.2.S1_at11/113+35632219..35637943powdery mildew resistance protein PM3b, putative, expressed
LOC_Os03g63150Os.35787.1.S1_at11/113+35632219..35637943powdery mildew resistance protein PM3b, putative, expressed
LOC_Os03g63150Os.35787.1.S1_x_at11/113+35632219..35637943powdery mildew resistance protein PM3b, putative, expressed
LOC_Os03g63160OsAffx.25806.1.S1_at11/113+35641868..35642997hypothetical protein
LOC_Os03g63170OsAffx.5116.1.S1_at10/113+35643625..35645941transposon protein, putative, unclassified
LOC_Os03g63190NANA3+35648360..35649242hypothetical protein
LOC_Os03g63200Os.44928.1.S1_at11/113+35650256..35654709powdery mildew resistance protein PM3b, putative, expressed
LOC_Os03g63210OsAffx.25807.1.S1_at11/113+35657592..35658741hypothetical protein
LOC_Os03g63210Os.52410.1.S1_x_at1/113+35657592..35658741hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35787.2.S1_at--805--6052Chr03:35632636..35632660 (25 bp)
GAGTTGTCATCATGGTTTGTAACGC
LOC_Os03g63150
Os.35787.2.S1_at--646--411Chr03:35632628..35632652 (25 bp)
ATCATGGTTTGTAACGCGTGCTTGA
LOC_Os03g63150
Os.35787.2.S1_at--949--7051Chr03:35632618..35632642 (25 bp)
GTAACGCGTGCTTGATGATTGATTT
LOC_Os03g63150
Os.35787.2.S1_at--1132--4651Chr03:35632613..35632637 (25 bp)
GCGTGCTTGATGATTGATTTCGAAT
LOC_Os03g63150
Os.35787.2.S1_at--297--5271Chr03:35632592..35632616 (25 bp)
GAATGAAATTCTAGCCACTATCCTT
LOC_Os03g63150
Os.35787.2.S1_at--568--10551Chr03:35632584..35632608 (25 bp)
TTCTAGCCACTATCCTTATGCTTAC
LOC_Os03g63150
Os.35787.2.S1_at--348--10151Chr03:35632574..35632598 (25 bp)
TATCCTTATGCTTACTCTCTCTATG
LOC_Os03g63150
Os.35787.2.S1_at--672--631Chr03:35632567..35632591 (25 bp)
ATGCTTACTCTCTCTATGGTGTGAC
LOC_Os03g63150
Os.35787.2.S1_at--340--3771Chr03:35632558..35632582 (25 bp)
CTCTCTATGGTGTGACTTCCTTGTA
LOC_Os03g63150
Os.35787.2.S1_at--121--10111Chr03:35632553..35632577 (25 bp)
TATGGTGTGACTTCCTTGTAGGATC
LOC_Os03g63150
Os.35787.2.S1_at--849--3631Chr03:35632543..35632567 (25 bp)
CTTCCTTGTAGGATCGTTACCGAAT
LOC_Os03g63150
Target Sequence 
GAGTTGTCATCATGGTTTGTAACGCGTGCTTGATGATTGATTTCGAATGAAATTCTAGCCACTATCCTTATGCTTACTCT
CTCTATGGTGTGACTTCCTTGTAGGATCGTTACCGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35787.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis