Browse Element(s) Details


Os.35410.1.S1_at

Description gb:AK067600.1
DB_XREF= gi:32977618
TID=Os.35410.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35410 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBb0096M04.115), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013111M09, full insert sequence.
FL= gb:AK060400.1 gb:AK067600.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6311011/11B-cell receptor-associated protein 31-like containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63040Os.51390.1.S1_at5/113+35586951..35591762expressed protein
LOC_Os03g63040Os.51390.1.S1_x_at5/113+35586951..35591762expressed protein
LOC_Os03g63040Os.5292.1.S1_at4/113+35586951..35591762expressed protein
LOC_Os03g63050OsAffx.10401.1.S1_at6/113+35592938..35593615hypothetical protein
LOC_Os03g63060Os.15918.1.S1_x_at11/113+35596426..35597816P21-Rho-binding domain containing protein, expressed
LOC_Os03g63074Os.16644.1.A1_at11/113+35598767..35605915Ser/Thr protein phosphatase family protein, expressed
LOC_Os03g63074Os.14750.1.S1_x_at9/113+35598767..35605915Ser/Thr protein phosphatase family protein, expressed
LOC_Os03g63074Os.14750.1.S1_at1/113+35598767..35605915Ser/Thr protein phosphatase family protein, expressed
LOC_Os03g63090Os.16908.1.S1_at11/113+35608593..35611728Actin-related protein 2/3 complex subunit 4, putative, expressed
LOC_Os03g63110Os.35410.1.S1_at11/113+35612602..35615784B-cell receptor-associated protein 31-like containing protein, expressed
LOC_Os03g63124Os.28346.5.S1_at11/113+35616990..35624977retrotransposon protein, putative, unclassified
LOC_Os03g63124Os.28346.5.S1_x_at11/113+35616990..35624977retrotransposon protein, putative, unclassified
LOC_Os03g63124Os.28346.3.S1_x_at10/113+35616990..35624977retrotransposon protein, putative, unclassified
LOC_Os03g63124Os.28346.4.S1_x_at8/113+35616990..35624977retrotransposon protein, putative, unclassified
LOC_Os03g63140Os.8727.1.S1_at10/113+35628426..35631287Nitrate-induced NOI protein, expressed
LOC_Os03g63140OsAffx.25806.1.S1_at2/113+35628426..35631287Nitrate-induced NOI protein, expressed
LOC_Os03g63150Os.35787.2.S1_at11/113+35632219..35637943powdery mildew resistance protein PM3b, putative, expressed
LOC_Os03g63150Os.35787.1.S1_at11/113+35632219..35637943powdery mildew resistance protein PM3b, putative, expressed
LOC_Os03g63150Os.35787.1.S1_x_at11/113+35632219..35637943powdery mildew resistance protein PM3b, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35410.1.S1_at--478--8691Chr03:35613107..35613131 (25 bp)
TGTGAACGCCCTACAGAAGCAGTCG
LOC_Os03g63110
Os.35410.1.S1_at--785--5911Chr03:35613079..35613103 (25 bp)
GAGCTTCTCCTGGAGTACGACAGGT
LOC_Os03g63110
Os.35410.1.S1_at--801--6571Chr03:35613038..35613062 (25 bp)
GATTCTACAATCTCAGCTTCACTAC
LOC_Os03g63110
Os.35410.1.S1_at--619--7591Chr03:35612991..35613015 (25 bp)
GGGCATGCAACTCAAAGTGCTCGTT
LOC_Os03g63110
Os.35410.1.S1_at--172--7311Chr03:35612975..35612999 (25 bp)
GTGCTCGTTACCAAGACTCGTAGAC
LOC_Os03g63110
Os.35410.1.S1_at--715--3611Chr03:35612906..35612930 (25 bp)
CTTGGAATCCTTGCTCTAACTTGTG
LOC_Os03g63110
Os.35410.1.S1_at--181--491Chr03:35612797..35612821 (25 bp)
ATCTGGTATCAGTTCATGTCGCCAT
LOC_Os03g63110
Os.35410.1.S1_at--1025--8691Chr03:35612781..35612805 (25 bp)
TGTCGCCATGCAGGGTTGTTGATCT
LOC_Os03g63110
Os.35410.1.S1_at--414--3171Chr03:35612748..35612772 (25 bp)
AATTGAACTTGTGGGCTGCGGCCAT
LOC_Os03g63110
Os.35410.1.S1_at--647--591Chr03:35612725..35612749 (25 bp)
ATGCCTCTATTCAGGCCTTGATCTG
LOC_Os03g63110
Os.35410.1.S1_at--86--1191Chr03:35612653..35612677 (25 bp)
AGCTTTGCTAAAACCGGGCTAGGAT
LOC_Os03g63110
Target Sequence 
TGTGAACGCCCTACAGAAGCAGTCGGAGGAGCTTCTCCTGGAGTACGACAGGTTGCTGGAAGACAACCAGATTCTACAAT
CTCAGCTTCACTACAAAGGCTGAAACAGTTANCCTGGGGCATGCAACTCAAAGTGCTCGTTACCAAGACTCGTAGACTTA
CCAAATGTCAGTGCAGAGCGAAGGTATTGGTGAATGTGATGCTTGGAATCCTTGCTCTAACTTGTGGTGTTGGGTTGATG
TACTAGTGTGTGCATTTGTAGTTTTGAGGAGTATAAAAGCCAGGGATGATATATGGTGAAATGGTTATGAATCTGGTATC
AGTTCATGTCGCCATGCAGGGTTGTTGATCTGAAAACTGAATTGAACTTGTGGGCTGCGGCCATGCCTCTATTCAGGCCT
TGATCTGAAAATCTGAAAAGGAGGAAAGTTTCCTACTGAAATGAATGCTCTGTTAGCTTTGCTAAAACCGGGCTAGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35410.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis