Browse Element(s) Details


Os.51390.1.S1_x_at

Description gb:AK062693.1
DB_XREF= gi:32972711
TID=Os.51390.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51390 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-106-A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-106-A05, full insert sequence.
FL= gb:AK062693.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g630405/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63000Os.20602.2.S1_x_at11/113+35561027..35563200hAT family dimerisation domain containing protein
LOC_Os03g63010Os.25587.2.S1_at10/113+35564574..35568552Immutans protein, putative, expressed
LOC_Os03g63010Os.25587.3.S1_x_at10/113+35564574..35568552Immutans protein, putative, expressed
LOC_Os03g63010Os.19042.1.S1_at3/113+35564574..35568552Immutans protein, putative, expressed
LOC_Os03g63020Os.8119.1.S1_at11/113+35572600..35577646Serine/threonine-protein kinase MHK, putative, expressed
LOC_Os03g63030Os.35344.18.S1_x_at11/113+35579471..35583282transposon protein, putative, Mutator sub-class
LOC_Os03g63030Os.35344.3.S1_x_at9/113+35579471..35583282transposon protein, putative, Mutator sub-class
LOC_Os03g63030OsAffx.22940.5.S1_x_at3/113+35579471..35583282transposon protein, putative, Mutator sub-class
LOC_Os03g63040Os.51390.1.S1_at5/113+35586951..35591762expressed protein
LOC_Os03g63040Os.51390.1.S1_x_at5/113+35586951..35591762expressed protein
LOC_Os03g63040Os.5292.1.S1_at4/113+35586951..35591762expressed protein
LOC_Os03g63050OsAffx.10401.1.S1_at6/113+35592938..35593615hypothetical protein
LOC_Os03g63060Os.15918.1.S1_x_at11/113+35596426..35597816P21-Rho-binding domain containing protein, expressed
LOC_Os03g63074Os.16644.1.A1_at11/113+35598767..35605915Ser/Thr protein phosphatase family protein, expressed
LOC_Os03g63074Os.14750.1.S1_x_at9/113+35598767..35605915Ser/Thr protein phosphatase family protein, expressed
LOC_Os03g63074Os.14750.1.S1_at1/113+35598767..35605915Ser/Thr protein phosphatase family protein, expressed
LOC_Os03g63090Os.16908.1.S1_at11/113+35608593..35611728Actin-related protein 2/3 complex subunit 4, putative, expressed
LOC_Os03g63110Os.35410.1.S1_at11/113+35612602..35615784B-cell receptor-associated protein 31-like containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51390.1.S1_x_at--44--9271Chr03:35586720..35586744 (25 bp)
TCCGAATCCAAACCTGACACACAGA
NONE
Os.51390.1.S1_x_at--15--1771Chr03:35586731..35586755 (25 bp)
ACCTGACACACAGAGGCGGCAGCGA
NONE
Os.51390.1.S1_x_at--745--7971Chr03:35586792..35586816 (25 bp)
GGATCGCATCGCAACGAACCCAGCA
NONE
Os.51390.1.S1_x_at--318--691Chr03:35586934..35586958 (25 bp)
ATGAGAGCCCCGAGGACATGGTCGC
NONE
Os.51390.1.S1_x_at--889--2111Chr03:35586949..35586973 (25 bp)
ACATGGTCGCCGTGGCACGAGTGAG
NONE
Os.51390.1.S1_x_at--604--8351Chr03:35587124..35587148 (25 bp)
GGCGGCCGTGCCATGTCTCGCTGCT
LOC_Os03g63040
Os.51390.1.S1_x_at--1102--9191Chr03:35587132..35587156 (25 bp)
TGCCATGTCTCGCTGCTTCCCGTTT
LOC_Os03g63040
Os.51390.1.S1_x_at--507--4031Chr03:35587152..35587176 (25 bp)
CGTTTCCGCCCCCAGGATATGAGAA
LOC_Os03g63040
Os.51390.1.S1_x_at--1121--3471Chr03:35587164..35587188 (25 bp)
CAGGATATGAGAAGACCGCCCGCCC
LOC_Os03g63040
Os.51390.1.S1_x_at--520--4271Chr03:35587203..35587223 (21 bp)
CCTCGCACCTGCTCGAAAAGGAGAA
LOC_Os03g63040
Os.51390.1.S1_x_at--274--5091NONE
GCACCTGCTCGAAAAGGAGAAACAC
NONE
Target Sequence 
TCCGAATCCAAACCTGACACACAGAGGCGGCAGCGAGAAGGTGGAGGAGAAATTTGAACGGAAAAGGTTGGGGGATCGCA
TCGCAACGAACCCAGCACTGCAGCCCCCCCGATTCCGATTGGGTGGGGGGTCGGATCCTCGGATCCCCCCGCGCCGCCGA
TAATTCGGCCCCGCCCCCGCCCAGATCCCCGCGATTCCGGCGCCGGCGCCGGGGATGAGAGCCCCGAGGACATGGTCGCC
GTGGCACGAGTGAGGCGGCCCCGGTTGCTGCGCCACCAGGAGGAGGGGAGGAGGACCGCCCGCGCCCGCGCCCGCGGCGG
CGGCGGAGGAGGTGTCTGCGGTGGTGGTGGTGGTGGTGACCTGAGGCGGAGGAGGGAGGAGGTGGTGGGTGATCCGGGGC
CCGAGGCGGCCGTGCCATGTCTCGCTGCTTCCCGTTTCCGCCCCCAGGATATGAGAAGACCGCCCGCCCCGACGGCCAGC
TAGCCTCGCACCTGCTCGAAAAGGAGAAACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51390.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis