Browse Element(s) Details


Os.25587.2.S1_at

Description gb:AK073859.1
DB_XREF= gi:32983882
TID=Os.25587.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25587 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative oxidase (OSJNBb0043P23.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033073L16, full insert sequence.
FL= gb:AK073859.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6301010/11Immutans protein, putative, expressed
LOC_Os05g338903/11Microtubule associated protein containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62920OsAffx.25802.1.S1_at11/113+35539574..35540016hypothetical protein
LOC_Os03g62950Os.37320.2.S1_x_at11/113+35545465..35546799expressed protein
LOC_Os03g62950Os.37320.1.S1_at11/113+35545465..35546799expressed protein
LOC_Os03g62950Os.37320.2.S1_at11/113+35545465..35546799expressed protein
LOC_Os03g62974OsAffx.10400.1.S1_x_at11/113+35554321..35558940hypothetical protein
LOC_Os03g62974OsAffx.25805.1.S1_x_at11/113+35554321..35558940hypothetical protein
LOC_Os03g62974OsAffx.10400.1.S1_at11/113+35554321..35558940hypothetical protein
LOC_Os03g62974OsAffx.25805.1.S1_at11/113+35554321..35558940hypothetical protein
LOC_Os03g62974Os.32503.1.S1_x_at2/113+35554321..35558940hypothetical protein
LOC_Os03g62974OsAffx.29203.3.A1_x_at2/113+35554321..35558940hypothetical protein
LOC_Os03g63000Os.20602.2.S1_x_at11/113+35561027..35563200hAT family dimerisation domain containing protein
LOC_Os03g63010Os.25587.2.S1_at10/113+35564574..35568552Immutans protein, putative, expressed
LOC_Os03g63010Os.25587.3.S1_x_at10/113+35564574..35568552Immutans protein, putative, expressed
LOC_Os03g63010Os.19042.1.S1_at3/113+35564574..35568552Immutans protein, putative, expressed
LOC_Os03g63020Os.8119.1.S1_at11/113+35572600..35577646Serine/threonine-protein kinase MHK, putative, expressed
LOC_Os03g63030Os.35344.18.S1_x_at11/113+35579471..35583282transposon protein, putative, Mutator sub-class
LOC_Os03g63030Os.35344.3.S1_x_at9/113+35579471..35583282transposon protein, putative, Mutator sub-class
LOC_Os03g63030OsAffx.22940.5.S1_x_at3/113+35579471..35583282transposon protein, putative, Mutator sub-class
LOC_Os03g63040Os.51390.1.S1_at5/113+35586951..35591762expressed protein
LOC_Os03g63040Os.51390.1.S1_x_at5/113+35586951..35591762expressed protein
LOC_Os03g63040Os.5292.1.S1_at4/113+35586951..35591762expressed protein
LOC_Os03g63050OsAffx.10401.1.S1_at6/113+35592938..35593615hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000910biological_processcytokinesis
GO:0000911biological_processcytokinesis by cell plate formation
GO:0001578biological_processmicrotubule bundle formation
GO:0007020biological_processmicrotubule nucleation
GO:0009266biological_processresponse to temperature stimulus
GO:0009644biological_processresponse to high light intensity
GO:0009657biological_processplastid organization and biogenesis
GO:0009658biological_processchloroplast organization and biogenesis
GO:0016117biological_processcarotenoid biosynthesis
GO:0031116biological_processpositive regulation of microtubule polymerization
GO:0051322biological_processanaphase
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0005874cellular_componentmicrotubule
GO:0009524cellular_componentphragmoplast
GO:0009579cellular_componentthylakoid
GO:0010005cellular_componentcortical microtubule (sensu Viridiplantae)
GO:0008017molecular_functionmicrotubule binding
GO:0009916molecular_functionalternative oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25587.2.S1_at--987--9692Chr03:35567263..35567287 (25 bp)
TCACACTCTGTCAATTATATTTACG
LOC_Os03g63010
Os.25587.2.S1_at--431--9591Chr03:35567292..35567316 (25 bp)
TCTTGGCAAAATAACATCCTGATCT
LOC_Os03g63010
Os.25587.2.S1_at--916--9811Chr03:35567303..35567327 (25 bp)
TAACATCCTGATCTGACCTTTGACT
LOC_Os03g63010
Os.25587.2.S1_at--15--5852Chr03:35567317..35567341 (25 bp)
GACCTTTGACTGCAGAAATGTAGCT
LOC_Os03g63010
Os.25587.2.S1_at--759--5591NONE
GAAATATCACAGTTGCAAGATCTTG
NONE
Os.25587.2.S1_at--1141--5951Chr03:35568369..35568393 (25 bp)
GAGAAGTTTACAATTGATCGACCAT
LOC_Os03g63010
Os.25587.2.S1_at--424--6392Chr05:19907870..19907894 (25 bp)
GATCGACCATTTTATGTTCTTTTGC
LOC_Os05g33890
Os.25587.2.S1_at--566--6732Chr05:19907885..19907909 (25 bp)
GTTCTTTTGCTTTATTTGGATTGTC
LOC_Os05g33890
Os.25587.2.S1_at--376--7932Chr05:19907902..19907940 (25 bp)
GGATTGTCATTGAAGCTAACTTAAT
LOC_Os05g33890
Os.25587.2.S1_at--928--3251Chr03:35568498..35568522 (25 bp)
CAACTATAGCGATTCATTGAGGGTA
LOC_Os03g63010
Os.25587.2.S1_at--1015--6112Chr03:35568516..35568540 (25 bp)
GAGGGTAAGAGCTCACATAACTTTT
LOC_Os03g63010
Target Sequence 
TCACACTCTGTCAATTATATTTACGTATTTCTTGGCAAAATAACATCCTGATCTGACCTTTGACTGCAGAAATGTAGCTG
ATGCCATGCCTGCATGCCACCCATGAGTGGCATACCTAATATCAATATCAAGGAATGACTTCCTGTAGTGCTCTTCTTCC
TTGAGAGCACACGCAATAAGCTATCAAAGAGTATACAGCTTTTCCAAGAAAACGAAAGGGAACGACAGAGAATTGCCACT
CTCTAACCCAAGAAATATCACAGTTGCAAGATCTTGGCAGCACACTTATTGAGTTGTGGAACCTAATGGACACACCAACT
GCTGAACAGAAATGCTTTGACCATGTTACGTCTTTGATTTCAGTCTCACCAAATACAAAAATGCCCCAAGGATGCCTTGC
ACGTGAACTTATTGAGAAGTTTACAATTGATCGACCATTTTATGTTCTTTTGCTTTATTTGGATTGTCATTGAAGCTAAC
TTAATTTTTCTGTAAAATCCGGTTGAGGTTAAGAGGTTGAATTCTTCTGATCATTGTCAATACAACTATAGCGATTCATT
GAGGGTAAGAGCTCACATAACTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25587.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis