Browse Element(s) Details


OsAffx.10400.1.S1_x_at

Description gb:NM_185207.1
DB_XREF= gi:34897499
TID=OsAffx.10400.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0043P23.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6297411/11hypothetical protein
LOC_Os07g084306/11Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62910Os.23707.1.S1_at11/113+35528696..35535002expressed protein
LOC_Os03g62910Os.23707.2.S1_at4/113+35528696..35535002expressed protein
LOC_Os03g62920OsAffx.25802.1.S1_at11/113+35539574..35540016hypothetical protein
LOC_Os03g62950Os.37320.2.S1_x_at11/113+35545465..35546799expressed protein
LOC_Os03g62950Os.37320.1.S1_at11/113+35545465..35546799expressed protein
LOC_Os03g62950Os.37320.2.S1_at11/113+35545465..35546799expressed protein
LOC_Os03g62974OsAffx.10400.1.S1_x_at11/113+35554321..35558940hypothetical protein
LOC_Os03g62974OsAffx.25805.1.S1_x_at11/113+35554321..35558940hypothetical protein
LOC_Os03g62974OsAffx.10400.1.S1_at11/113+35554321..35558940hypothetical protein
LOC_Os03g62974OsAffx.25805.1.S1_at11/113+35554321..35558940hypothetical protein
LOC_Os03g62974Os.32503.1.S1_x_at2/113+35554321..35558940hypothetical protein
LOC_Os03g62974OsAffx.29203.3.A1_x_at2/113+35554321..35558940hypothetical protein
LOC_Os03g63000Os.20602.2.S1_x_at11/113+35561027..35563200hAT family dimerisation domain containing protein
LOC_Os03g63010Os.25587.2.S1_at10/113+35564574..35568552Immutans protein, putative, expressed
LOC_Os03g63010Os.25587.3.S1_x_at10/113+35564574..35568552Immutans protein, putative, expressed
LOC_Os03g63010Os.19042.1.S1_at3/113+35564574..35568552Immutans protein, putative, expressed
LOC_Os03g63020Os.8119.1.S1_at11/113+35572600..35577646Serine/threonine-protein kinase MHK, putative, expressed
LOC_Os03g63030Os.35344.18.S1_x_at11/113+35579471..35583282transposon protein, putative, Mutator sub-class
LOC_Os03g63030Os.35344.3.S1_x_at9/113+35579471..35583282transposon protein, putative, Mutator sub-class
LOC_Os03g63030OsAffx.22940.5.S1_x_at3/113+35579471..35583282transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0000162biological_processtryptophan biosynthesis
GO:0009507cellular_componentchloroplast
GO:0004834molecular_functiontryptophan synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10400.1.S1_x_at--1143--2712Chr07:4329369..4329451 (25 bp)
AAGCACTGTTGGAGTTACAGATGCA
LOC_Os07g08430
OsAffx.10400.1.S1_x_at--372--9871Chr03:35554796..35554820 (25 bp)
TACAGATGCAGGTGCAAATGGCGGT
LOC_Os03g62974
OsAffx.10400.1.S1_x_at--256--7732Chr07:4329390..4329413 (24 bp)
GGTGGCAAGGTGCAATCTCTTCTCC
LOC_Os07g08430
OsAffx.10400.1.S1_x_at--901--2892Chr07:4329384..4329408 (25 bp)
AAGGTGCAATCTCTTCTCCAGGATA
LOC_Os07g08430
OsAffx.10400.1.S1_x_at--545--7352Chr07:4329381..4329405 (25 bp)
GTGCAATCTCTTCTCCAGGATATCA
LOC_Os07g08430
OsAffx.10400.1.S1_x_at--1033--452Chr07:4329376..4329400 (25 bp)
ATCTCTTCTCCAGGATATCAAGCAG
LOC_Os07g08430
OsAffx.10400.1.S1_x_at--122--10592Chr07:4329374..4329395 (22 bp)
TTCTCCAGGATATCAAGCAGGTGTT
LOC_Os07g08430
OsAffx.10400.1.S1_x_at--58--7951Chr03:35554381..35554772 (25 bp)
GGATATCAAGCAGGTGTTCGATAAA
LOC_Os03g62974
OsAffx.10400.1.S1_x_at--1049--1031Chr03:35554370..35554394 (25 bp)
AGGTGTTCGATAAAATGGTCAGCCC
LOC_Os03g62974
OsAffx.10400.1.S1_x_at--757--6711Chr03:35554366..35554390 (25 bp)
GTTCGATAAAATGGTCAGCCCGACA
LOC_Os03g62974
OsAffx.10400.1.S1_x_at--513--331Chr03:35554361..35554385 (25 bp)
ATAAAATGGTCAGCCCGACAACAGC
LOC_Os03g62974
Target Sequence 
AAGCACTGTTGGAGTTACAGATGCAGGTGCAAATGGCGGTGGCAAGGTGCAATCTCTTCTCCAGGATATCAAGCAGGTGT
TCGATAAAATGGTCAGCCCGACAACAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10400.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis