Browse Element(s) Details


OsAffx.25802.1.S1_at

Description tigr:9631.m06221
TID=OsAffx.25802.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6292011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62900OsAffx.25801.1.S1_at11/113+35522435..35525874hypothetical protein
LOC_Os03g62910Os.23707.1.S1_at11/113+35528696..35535002expressed protein
LOC_Os03g62910Os.23707.2.S1_at4/113+35528696..35535002expressed protein
LOC_Os03g62920OsAffx.25802.1.S1_at11/113+35539574..35540016hypothetical protein
LOC_Os03g62950Os.37320.2.S1_x_at11/113+35545465..35546799expressed protein
LOC_Os03g62950Os.37320.1.S1_at11/113+35545465..35546799expressed protein
LOC_Os03g62950Os.37320.2.S1_at11/113+35545465..35546799expressed protein
LOC_Os03g62974OsAffx.10400.1.S1_x_at11/113+35554321..35558940hypothetical protein
LOC_Os03g62974OsAffx.25805.1.S1_x_at11/113+35554321..35558940hypothetical protein
LOC_Os03g62974OsAffx.10400.1.S1_at11/113+35554321..35558940hypothetical protein
LOC_Os03g62974OsAffx.25805.1.S1_at11/113+35554321..35558940hypothetical protein
LOC_Os03g62974Os.32503.1.S1_x_at2/113+35554321..35558940hypothetical protein
LOC_Os03g62974OsAffx.29203.3.A1_x_at2/113+35554321..35558940hypothetical protein
LOC_Os03g63000Os.20602.2.S1_x_at11/113+35561027..35563200hAT family dimerisation domain containing protein
LOC_Os03g63010Os.25587.2.S1_at10/113+35564574..35568552Immutans protein, putative, expressed
LOC_Os03g63010Os.25587.3.S1_x_at10/113+35564574..35568552Immutans protein, putative, expressed
LOC_Os03g63010Os.19042.1.S1_at3/113+35564574..35568552Immutans protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25802.1.S1_at--589--3751Chr03:35539670..35539912 (25 bp)
CTCTTCCCTCGTCGCCATGGAAAGA
LOC_Os03g62920
OsAffx.25802.1.S1_at--512--7231Chr03:35539680..35539922 (25 bp)
GTCGCCATGGAAAGAACCGGGAAGC
LOC_Os03g62920
OsAffx.25802.1.S1_at--952--5431Chr03:35539911..35539935 (25 bp)
GAACCGGGAAGCCATAAATCCTATT
LOC_Os03g62920
OsAffx.25802.1.S1_at--927--7611Chr03:35539916..35539940 (25 bp)
GGGAAGCCATAAATCCTATTCAGTA
LOC_Os03g62920
OsAffx.25802.1.S1_at--1012--4372Chr03:35539921..35539945 (25 bp)
GCCATAAATCCTATTCAGTACCCTT
LOC_Os03g62920
OsAffx.25802.1.S1_at--977--10211Chr03:35539932..35539956 (25 bp)
TATTCAGTACCCTTTTTCTAATCCG
LOC_Os03g62920
OsAffx.25802.1.S1_at--3--9411Chr03:35539935..35539959 (25 bp)
TCAGTACCCTTTTTCTAATCCGAAT
LOC_Os03g62920
OsAffx.25802.1.S1_at--35--10391Chr03:35539945..35539969 (25 bp)
TTTTCTAATCCGAATTCCCAATTGC
LOC_Os03g62920
OsAffx.25802.1.S1_at--770--3031Chr03:35539951..35539975 (25 bp)
AATCCGAATTCCCAATTGCTAATCG
LOC_Os03g62920
OsAffx.25802.1.S1_at--342--5212Chr03:35539956..35539980 (25 bp)
GAATTCCCAATTGCTAATCGAGACA
LOC_Os03g62920
OsAffx.25802.1.S1_at--667--9311Chr03:35539960..35539984 (25 bp)
TCCCAATTGCTAATCGAGACAAACA
LOC_Os03g62920
Target Sequence 
CTCTTCCCTCGTCGCCATGGAAAGAACCGGGAAGCCATAAATCCTATTCAGTACCCTTTTTCTAATCCGAATTCCCAATT
GCTAATCGAGACAAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25802.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis