Browse Element(s) Details


OsAffx.25801.1.S1_at

Description gb:NM_185215.1
DB_XREF= gi:34897515
TID=OsAffx.25801.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0043P23.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6290011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62860Os.29814.1.S1_at11/113+35497637..35500113Glycosyl hydrolases family 17 protein, expressed
LOC_Os03g62870Os.14847.1.S1_at11/113+35501850..35504003RNA polymerase Rpb8 family protein, expressed
LOC_Os03g62880OsAffx.1594.1.S1_at11/113+35510622..35511544hypothetical protein
LOC_Os03g62900OsAffx.25801.1.S1_at11/113+35522435..35525874hypothetical protein
LOC_Os03g62910Os.23707.1.S1_at11/113+35528696..35535002expressed protein
LOC_Os03g62910Os.23707.2.S1_at4/113+35528696..35535002expressed protein
LOC_Os03g62920OsAffx.25802.1.S1_at11/113+35539574..35540016hypothetical protein
LOC_Os03g62950Os.37320.2.S1_x_at11/113+35545465..35546799expressed protein
LOC_Os03g62950Os.37320.1.S1_at11/113+35545465..35546799expressed protein
LOC_Os03g62950Os.37320.2.S1_at11/113+35545465..35546799expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25801.1.S1_at--1055--1111Chr03:35523203..35523227 (25 bp)
AGTGCATTGTACTCACATGTCGCCA
LOC_Os03g62900
OsAffx.25801.1.S1_at--15--1091Chr03:35523161..35523185 (25 bp)
AGGGCTTTGACCCAGCTACGGATTT
LOC_Os03g62900
OsAffx.25801.1.S1_at--12--5691Chr03:35523063..35523087 (25 bp)
GACATTGCCTTCATCTTAGTTAGTA
LOC_Os03g62900
OsAffx.25801.1.S1_at--1151--2491Chr03:35523039..35523063 (25 bp)
AACATGCCAATTATGCTGCCGGCGT
LOC_Os03g62900
OsAffx.25801.1.S1_at--1099--10351Chr03:35523010..35523034 (25 bp)
TTTTGCCCCGGGAGTGGATTTGCCA
LOC_Os03g62900
OsAffx.25801.1.S1_at--59--8551Chr03:35522948..35522972 (25 bp)
TGGAGCAACTCCCAGGCTGCAATAT
LOC_Os03g62900
OsAffx.25801.1.S1_at--648--271Chr03:35522901..35522925 (25 bp)
ATACCTACTGTATCCCCAGGTGGAA
LOC_Os03g62900
OsAffx.25801.1.S1_at--392--2651Chr03:35522696..35522720 (25 bp)
AAGCAGGTTACTCTGGAAGTCCCCT
LOC_Os03g62900
OsAffx.25801.1.S1_at--1036--2831Chr03:35522680..35522704 (25 bp)
AAGTCCCCTCCTGCATGAAGAAAAG
LOC_Os03g62900
OsAffx.25801.1.S1_at--1080--1071Chr03:35522641..35522665 (25 bp)
AGGGCGTGGCGCATACCAAGCATCA
LOC_Os03g62900
OsAffx.25801.1.S1_at--905--7831Chr03:35522464..35522488 (25 bp)
GGTACGATCCCTGTTGAAGACTTGA
LOC_Os03g62900
Target Sequence 
AGTGCATTGTACTCACATGTCGCCATGTGGTCAAAGGAAGCAAGGGCTTTGACCCAGCTACGGATTTGCTGCGTATTAGG
TTTCTGCAGGGTGTTGAAGAGGACATGCAAGGTCAATTAATATTAGAAGATCCATTTTTAGACATTGCCTTCATCTTAGT
TAGTAACATGCCAATTATGCTGCCGGCGTTGCGTTTTGCCCCGGGAGTGGATTTGCCAGTCGGCACTCCTGTCTTCCTCC
TAGGAAACTGCTTTCTGGAGCAACTCCCAGGCTGCAATATTCAAACTGCAATTATGCCAACAATACCTACTGTATCCCCA
GGTGGAATAAGTGCACCATGCAAAGTGGAATATGGTCCTCATATAACAAGAAGAGAGATTCAATTTACATGCCCAAACAA
AGCAGGTTACTCTGGAAGTCCCCTCCTGCATGAAGAAAAGGTTATTGGAATACTAGGGCGTGGCGCATACCAAGCATCAC
TTGCAGTTTGCACTGAAAATTTGATCACCTTTTTGGAAACGAGGCTTGGTGTGGACGAAGGTACGATCCCTGTTGAAGAC
TTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25801.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis