Browse Element(s) Details


Os.29814.1.S1_at

Description gb:AK109814.1
DB_XREF= gi:32995023
TID=Os.29814.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29814 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative beta-1,3-glucanase (OSJNBb0043P23.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-147-H05, full insert sequence.
FL= gb:AK109814.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6286011/11Glycosyl hydrolases family 17 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62810OsAffx.667.1.S1_at3/113+35472508..35475674transposon protein, putative, Mutator sub-class
LOC_Os03g62820NANA3+35477948..35479080hypothetical protein
LOC_Os03g62830OsAffx.13589.1.S1_at11/113+35482857..35485781hypothetical protein
LOC_Os03g62840OsAffx.13590.1.S1_at11/113+35486614..35487177hypothetical protein
LOC_Os03g62850Os.20160.1.S1_at11/113+35488114..35496981AMP-binding protein, putative, expressed
LOC_Os03g62860Os.29814.1.S1_at11/113+35497637..35500113Glycosyl hydrolases family 17 protein, expressed
LOC_Os03g62870Os.14847.1.S1_at11/113+35501850..35504003RNA polymerase Rpb8 family protein, expressed
LOC_Os03g62880OsAffx.1594.1.S1_at11/113+35510622..35511544hypothetical protein
LOC_Os03g62900OsAffx.25801.1.S1_at11/113+35522435..35525874hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29814.1.S1_at--282--4051Chr03:35498839..35498863 (25 bp)
CGAGTGCTACCTGCCGAACACGGTG
LOC_Os03g62860
Os.29814.1.S1_at--616--1571Chr03:35498802..35498826 (25 bp)
AGCTACGTGTTCAGCGCGCACTGGA
LOC_Os03g62860
Os.29814.1.S1_at--1126--2451Chr03:35498778..35498802 (25 bp)
AACAAGTTCAGCAAGGTGTACGGCG
LOC_Os03g62860
Os.29814.1.S1_at--840--8751Chr03:35498762..35498786 (25 bp)
TGTACGGCGGCTGGTGCTACTTCGC
LOC_Os03g62860
Os.29814.1.S1_at--1007--651Chr03:35497849..35497873 (25 bp)
ATGCAAATTTCCCAGCGTTACTCCA
LOC_Os03g62860
Os.29814.1.S1_at--946--4351Chr03:35497838..35497862 (25 bp)
CCAGCGTTACTCCAAGCTAATGAAG
LOC_Os03g62860
Os.29814.1.S1_at--956--4831Chr03:35497823..35497847 (25 bp)
GCTAATGAAGAGTGTCCGCGCTTTC
LOC_Os03g62860
Os.29814.1.S1_at--108--4151Chr03:35497807..35497831 (25 bp)
CGCGCTTTCATCCTAGACAGATGCT
LOC_Os03g62860
Os.29814.1.S1_at--420--3411Chr03:35497689..35497713 (25 bp)
CAGAACTATCACAACTCACACGGGA
LOC_Os03g62860
Os.29814.1.S1_at--549--9691Chr03:35497674..35497698 (25 bp)
TCACACGGGAGAGAGTTGCTTGCCA
LOC_Os03g62860
Os.29814.1.S1_at--114--6671Chr03:35497660..35497684 (25 bp)
GTTGCTTGCCAATTGAGGCCTTTGA
LOC_Os03g62860
Target Sequence 
CGAGTGCTACCTGCCGAACACGGTGGCGGCGCACGCGAGCTACGTGTTCAGCGCGCACTGGAACAAGTTCAGCAAGGTGT
ACGGCGGCTGGTGCTACTTCGCCGGCCTCGCCATGGAGACCACCACCGATCCAAGTCATGGATCATGCAAATTTCCCAGC
GTTACTCCAAGCTAATGAAGAGTGTCCGCGCTTTCATCCTAGACAGATGCTGCAATTGTAATCATGGAGCGTTATGAAAT
AAGCATATGGGACCATGACCATAAATTGGATTCCATATTGTACTGTAGTATAATCAGTTTGTAACAGAACTATCACAACT
CACACGGGAGAGAGTTGCTTGCCAATTGAGGCCTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29814.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis