Browse Element(s) Details


OsAffx.13589.1.S1_at

Description tigr:9631.m06211
TID=OsAffx.13589.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6283011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62770OsAffx.25799.1.S1_at11/113+35458027..35458911hypothetical protein
LOC_Os03g62780Os.48075.1.S1_at11/113+35459476..35462830S1 RNA binding domain containing protein, expressed
LOC_Os03g62790Os.7536.1.S1_at11/113+35463158..35465296Pirin, putative, expressed
LOC_Os03g62800NANA3+35468607..35471744retrotransposon protein, putative, unclassified
LOC_Os03g62810OsAffx.667.1.S1_at3/113+35472508..35475674transposon protein, putative, Mutator sub-class
LOC_Os03g62820NANA3+35477948..35479080hypothetical protein
LOC_Os03g62830OsAffx.13589.1.S1_at11/113+35482857..35485781hypothetical protein
LOC_Os03g62840OsAffx.13590.1.S1_at11/113+35486614..35487177hypothetical protein
LOC_Os03g62850Os.20160.1.S1_at11/113+35488114..35496981AMP-binding protein, putative, expressed
LOC_Os03g62860Os.29814.1.S1_at11/113+35497637..35500113Glycosyl hydrolases family 17 protein, expressed
LOC_Os03g62870Os.14847.1.S1_at11/113+35501850..35504003RNA polymerase Rpb8 family protein, expressed
LOC_Os03g62880OsAffx.1594.1.S1_at11/113+35510622..35511544hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13589.1.S1_at--48--2472Chr03:33719844..33720137 (25 bp)
AACAACAATGGTCGATTCCAGCAAG
NONE
OsAffx.13589.1.S1_at--154--6591Chr03:35483395..35483419 (25 bp)
GATTCCAGCAAGAGCGCGCGGTTAA
LOC_Os03g62830
OsAffx.13589.1.S1_at--1102--1651Chr03:35483383..35483407 (25 bp)
AGCGCGCGGTTAACTCTGGCAATGG
LOC_Os03g62830
OsAffx.13589.1.S1_at--612--4511Chr03:35483311..35483335 (25 bp)
GCCGAGGCTACTCCGGCAATGGCAA
LOC_Os03g62830
OsAffx.13589.1.S1_at--178--4851Chr03:35483263..35483287 (25 bp)
GCTACTCTGGCAATGGTGGTTACCA
LOC_Os03g62830
OsAffx.13589.1.S1_at--972--8411Chr03:35483234..35483258 (25 bp)
GGCCGAGGCTACTCCAACAATGGTG
LOC_Os03g62830
OsAffx.13589.1.S1_at--440--8591Chr03:35483196..35483220 (25 bp)
TGGTAACCAAGGCAACGGCAGGAAC
LOC_Os03g62830
OsAffx.13589.1.S1_at--1108--3251Chr03:35483184..35483208 (25 bp)
CAACGGCAGGAACGAGAGCGACTCT
LOC_Os03g62830
OsAffx.13589.1.S1_at--624--2591Chr03:35483174..35483198 (25 bp)
AACGAGAGCGACTCTATTCTCTCTC
LOC_Os03g62830
OsAffx.13589.1.S1_at--538--4611Chr03:35483114..35483138 (25 bp)
GCGACGCCAGAGAAGGTGCAGTCCC
LOC_Os03g62830
OsAffx.13589.1.S1_at--735--2831Chr03:35482904..35482928 (25 bp)
CAAGTCAAGTCCCAAGCCAAGGCTC
LOC_Os03g62830
Target Sequence 
AACAACAATGGTCGATTCCAGCAAGAGCGCGCGGTTAACTCTGGCAATGGTGGATACAGGCAGGGCGGCTACAGAGGTGA
TGGTGGCTACCAGCAGGGCCGAGGCTACTCCGGCAATGGCAATGGTGGCTACCAGCAGGGCCAAGGCTACTCTGGCAATG
GTGGTTACCAGCAGGGCCGAGGCTACTCCAACAATGGTGGCTACCGGCGTGGTGGTAACCAAGGCAACGGCAGGAACGAG
AGCGACTCTATTCTCTCTCCTGCCCACTTCCCTGCGCTGACAGGGACCATCCCTGCGACGCCAGAGAAGGTGCAGTCCCA
GTCCCAGGCCTCCTCGTCTCCAGCTCCAGCTCAAGCTCAGCCTCAGGCTCAGACCCTGTCATCGTCCTCGTCCTCAGGCG
CAGCTCCGGCTCCTGCCCAAGCCAAGTCACAGGCTCCTCCTCCGGCTCCTGCTCAAGCCAAGTCCCAGGCTCCTCCTGCC
CAAGCCAAGTCCCAGGCTCCTGCCCAAGTCAAGTCCCAAGCCAAGGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13589.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis