Browse Element(s) Details


Os.7536.1.S1_at

Description gb:AK105971.1
DB_XREF= gi:32991180
TID=Os.7536.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7536 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-205-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-205-F02, full insert sequence.
FL= gb:AK105971.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6279011/11Pirin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62730Os.8707.1.S1_at11/113+35437810..35445747transposon protein, putative, unclassified, expressed
LOC_Os03g62730Os.8707.1.S2_at11/113+35437810..35445747transposon protein, putative, unclassified, expressed
LOC_Os03g62740Os.8707.3.S1_x_at11/113+35442476..35445756GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os03g62740Os.8707.2.A1_at9/113+35442476..35445756GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os03g62750OsAffx.25798.1.S1_at11/113+35450259..35456299ARTEMIS protein, chloroplast precursor, putative, expressed
LOC_Os03g62750Os.8356.1.S1_at1/113+35450259..35456299ARTEMIS protein, chloroplast precursor, putative, expressed
LOC_Os03g62760Os.20700.1.S1_at11/113+35455661..35456964expressed protein
LOC_Os03g62770OsAffx.25799.1.S1_at11/113+35458027..35458911hypothetical protein
LOC_Os03g62780Os.48075.1.S1_at11/113+35459476..35462830S1 RNA binding domain containing protein, expressed
LOC_Os03g62790Os.7536.1.S1_at11/113+35463158..35465296Pirin, putative, expressed
LOC_Os03g62800NANA3+35468607..35471744retrotransposon protein, putative, unclassified
LOC_Os03g62810OsAffx.667.1.S1_at3/113+35472508..35475674transposon protein, putative, Mutator sub-class
LOC_Os03g62820NANA3+35477948..35479080hypothetical protein
LOC_Os03g62830OsAffx.13589.1.S1_at11/113+35482857..35485781hypothetical protein
LOC_Os03g62840OsAffx.13590.1.S1_at11/113+35486614..35487177hypothetical protein
LOC_Os03g62850Os.20160.1.S1_at11/113+35488114..35496981AMP-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0010244biological_processresponse to low fluence blue light
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7536.1.S1_at--823--5771Chr03:35463724..35463748 (25 bp)
GACGATGTACATGGACTTCACGATG
LOC_Os03g62790
Os.7536.1.S1_at--1098--8171Chr03:35463659..35463683 (25 bp)
GGAACGCCTTCGTCTACATCATCGA
LOC_Os03g62790
Os.7536.1.S1_at--851--4591Chr03:35463563..35463587 (25 bp)
GCGACGGCCTGAGCGTCTGGAATAA
LOC_Os03g62790
Os.7536.1.S1_at--906--7171Chr03:35463549..35463573 (25 bp)
GTCTGGAATAAGTCCGGCGAGCCGC
LOC_Os03g62790
Os.7536.1.S1_at--848--9711Chr03:35463494..35463518 (25 bp)
TCAACGAGCCCGTGGTGCAGCATGG
LOC_Os03g62790
Os.7536.1.S1_at--773--2031Chr03:35463416..35463440 (25 bp)
ACTATGGCAGGAATGGCTTCGAGAA
LOC_Os03g62790
Os.7536.1.S1_at--382--5951Chr03:35463396..35463420 (25 bp)
GAGAAGGCCCGCCATTGGAGCTCCA
LOC_Os03g62790
Os.7536.1.S1_at--1116--8531Chr03:35463381..35463405 (25 bp)
TGGAGCTCCACAGCATGATTTCATC
LOC_Os03g62790
Os.7536.1.S1_at--630--391Chr03:35463330..35463354 (25 bp)
ATCACCATACATAATGCTGCTGAGC
LOC_Os03g62790
Os.7536.1.S1_at--782--4771Chr03:35463315..35463339 (25 bp)
GCTGCTGAGCTGAACATGATGCTGT
LOC_Os03g62790
Os.7536.1.S1_at--1089--3111Chr03:35463232..35463256 (25 bp)
AATTTTTCCTTGATTGGCTGTGTAA
LOC_Os03g62790
Target Sequence 
GACGATGTACATGGACTTCACGATGCNGCCGGGGTCGCAGCTGCACCAGCCCATCCCGGAGGCCTGGAACGCCTTCGTCT
ACATCATCGACGGCGAGGGCGTGTTCGGGAGGGAGAAGGCGTCGCCGGCGACCGCCCACCACTGCCTCGTTCTCGGCCCC
GGCGACGGCCTGAGCGTCTGGAATAAGTCCGGCGAGCCGCTCCGGTTCGCGCTCGTCGGCGGGCAGCCGCTCAACGAGCC
CGTGGTGCAGCATGGCCCCTTCGTGATGAACACCCGCGCCGAGATCCAGCAGGCCATGGAGGATTACTACTATGGCAGGA
ATGGCTTCGAGAAGGCCCGCCATTGGAGCTCCACAGCATGATTTCATCATCCTCCCTTCATACCATGACACACCATCACC
ATACATAATGCTGCTGAGCTGAACATGATGCTGTTTTTAGGCATATTAGTATATCATTTGATTCAGTAATAATAAATAGG
TTTATTGTCATAAATTTTTCCTTGATTGGCTGTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7536.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis